Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2074 ATGACCCGAAAGAAGGTGAAGCTGGCATTCATAGCCAACGACTCAGCGAGAAAAGCAACGTACAAGAAAAGAAAGAATGGTTTTATAAAGAAGATAGATGAACTCACCACTCTCTGTGGGATCGAGGCCTGTGCTATTGTGTACAGTCCGTACGATTCTCAGCCGGAGGTATGGCCGTCGGCGTTCGTGGTCCAACGCGTACTGTCAAAGTTCCGGAGAATGCCGGAGTTGGAGCAGAGCAAAAAGATGGTGAACCAGGAGGGCTTCCTGAAGCAGAGGATCCTGAAAGCCAAAGAGCAAGTGAATAAGCTGAGGAAGGAGAATAGGGAGAAGGAGATGACGCAGATCATGTACCAGTACCTCAGTGCAGGGAAGGTTCTGCACAACATGACCACGATTGATCTCAACGATCTGGCGTGGCTGATCGAGCAGAATCTGAAGGACGCCAATCGGAGGATTGAGGTGCTGGACAAGAGGGCTCAGAGCCAGAGGGCGGCGGAGGCAGCTGCGGATGCGGCAGCAGCGAGGAGCAGAGGCAAGGCGAAGGTGGATGAGATGGAGATGAACGAGAACGTAGTGCCGAAGCAGCAGTGA 594 0.5286 MTRKKVKLAFIANDSARKATYKKRKNGFIKKIDELTTLCGIEACAIVYSPYDSQPEVWPSAFVVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQVNKLRKENREKEMTQIMYQYLSAGKVLHNMTTIDLNDLAWLIEQNLKDANRRIEVLDKRAQSQRAAEAAADAAAARSRGKAKVDEMEMNENVVPKQQ 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2074 197 Gene3D - 13 123 IPR036879 GO:0003677|GO:0046983
Dere04g2074 197 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Dere04g2074 197 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Dere04g2074 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dere04g2074 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere04g2074 197 Coils Coil 146 166 - -
Dere04g2074 197 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere04g2074 197 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Dere04g2074 197 MobiDBLite consensus disorder prediction 167 197 - -
Dere04g2074 197 Coils Coil 87 114 - -
Dere04g2074 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere04g2074 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere04g2074 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere04g2074 197 PANTHER MADS BOX PROTEIN 3 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2074 Dere-ChrDere04 23743965 23744558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2074 1 175 Type I MADS-box Gene Family AT5G48670 59.429 1.09e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere04g2074 SRF-TF 3.8e-16 No_clan