Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2071 ATGGTTCTGTCTTGGACAAGAAGAAGAGTTTTCCGCCGTGCCCGCAAAGGAAAAGACCTTCCCAGCGGCGGCGCCGGAGACTTGGACGTGGAAGTGGTTGTTCCGAACCACTTCCGGTGTCCGATTACTCTGGACTTGATGAAAGATCCGGTGACTTTATCCACCGGAATCACCTACGACAGAGACAGCATCGAGAAGTGGGTGGAATCCGGAAACGCGACATGCCCGGTGACCAACCAGCCGTTGATTAGCTCCGACATGATCCCAAATCACGCCATCCGTAGGATGATCCAAGATTGGTGCGTCCAGCACCGACCCTACGGCATCGAAAGAATCCCCACCCCAAGAATACCAGTCACGCAGTACGAGGTCAAGGAGATCTGTACGAGGATAATGTCGGCCACCCAACGTGGGGACGACGACAAGTGCCTGCAATTCGTGAAGAAGATTAAGATTTTGGGGAAAGAGAGCGAGAGGAACAAGAAGTGCATAGTGGAACACGGGGCTGGTATTGCATTAGCCAACGCCTTCAATTCTTTCTCAAATGCTTCGATTGAGAAAAAAGTGGGTGTTTTAGAGGAGATTCTGGGCGTTCTAACATGGATGTTTCCACTTGGACACCAGGGTCATTCTCAAACTCAATCATTGTTGGGTTCAGAGGCGTCTTTACGTTGCATGGTTTGGTTCCTTAACGGTAAAGACCTCTCGTCAAGGCAAAACGCAGCTTTGGTGCTAAAGAAAGTGCCTTTAGAGCCATTGGCAAAAGCTGAAGGTGTAATTGAAGCTTTGGTCAAGATGATTAGGGAGCCTGTAGGGCCTTGTGCCACAAAAGCATGCTTGAAAGCAATTTTCCAGTTAGTTTCCTCATCAGAGGAGAAAGAGAGGATCATCAAAAGATGTTTGGAATTGGGTTTGGTTTCGTTGTTGCTTGAAGCCCTTGTGGATGGGGATAAAGGAATATGTGAGAAGGCTTTGGGTGTGTTGGATTGTATGTGTGATTACAAAGAAGGGAAGGAAGTGGCCAAGGCTAATGTTCTAACTTTGCCTCTTGTAGTGAAGAAGATTTTGAGGGTATCAGGATTGGCTTCTGATTTTGGAGTATCCATTCTTTGGAAGCTGTGTGACAAGATGGATGAAGGTGTTGTGATGGAGGCACTTCAAGTGGGAGCGTTTCAGAAGATATTGGTTTTGTTGCAGGTTGGGTGTGGAGAGAGCACAAAGGAGAAGGCCACTGATGTGTTGAAGTTGTTGAATGCTTACAGGAGCACAGTGAAGTGTGCTGATTCATCTTTGGATTTCAAGTACCTTAAGAAGCCCTTTTGA 1323 0.4739 MVLSWTRRRVFRRARKGKDLPSGGAGDLDVEVVVPNHFRCPITLDLMKDPVTLSTGITYDRDSIEKWVESGNATCPVTNQPLISSDMIPNHAIRRMIQDWCVQHRPYGIERIPTPRIPVTQYEVKEICTRIMSATQRGDDDKCLQFVKKIKILGKESERNKKCIVEHGAGIALANAFNSFSNASIEKKVGVLEEILGVLTWMFPLGHQGHSQTQSLLGSEASLRCMVWFLNGKDLSSRQNAALVLKKVPLEPLAKAEGVIEALVKMIREPVGPCATKACLKAIFQLVSSSEEKERIIKRCLELGLVSLLLEALVDGDKGICEKALGVLDCMCDYKEGKEVAKANVLTLPLVVKKILRVSGLASDFGVSILWKLCDKMDEGVVMEALQVGAFQKILVLLQVGCGESTKEKATDVLKLLNAYRSTVKCADSSLDFKYLKKPF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2071 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 106 IPR013083 -
Dere04g2071 440 SMART Ubox_2 37 100 IPR003613 GO:0004842|GO:0016567
Dere04g2071 440 SUPERFAMILY RING/U-box 31 109 - -
Dere04g2071 440 PANTHER WDSAM1 PROTEIN 31 420 IPR045185 GO:0061630
Dere04g2071 440 CDD RING-Ubox_PUB 35 87 IPR045210 -
Dere04g2071 440 FunFam RING-type E3 ubiquitin transferase 34 104 - -
Dere04g2071 440 Gene3D - 123 420 IPR011989 -
Dere04g2071 440 Pfam U-box domain 34 105 IPR003613 GO:0004842|GO:0016567
Dere04g2071 440 SUPERFAMILY ARM repeat 224 417 IPR016024 -
Dere04g2071 440 ProSiteProfiles U-box domain profile. 33 107 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2071 Dere-ChrDere04 23711851 23713173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2071 31 440 U-box Gene Family AT5G37490 48.441 4.98e-128 375