Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2052 ATGTCTTTCGACGAGAGCCACAAGATCCCTACGAGTTCTCGAGATTTCGACCGGGGCAGCCAAACAAGGTCCATTTTCACTCGTCCACATAGTTCCCCCCTCTTCTACGTTCTATCCATCCCCCATCTGCCTCTCCTCTTGTTCTTCTCCTTCTCCTCACTTCTATATTCCCAAGCTTCCAGCTTCTTCTTTGTTTCTCTGGTTCTTCTCAATACTGTCACTCTCTTTCCCCTTCCAGCGGTTGATTCCGACGTTTTGGTTTATAAAATTTCGGTTAAAATAAAGAATGAACAATCTATTTGTTATGATAAGTCTTCGCTTTCAGTTGCCAAAAATGCATATATTCCAGAAATGGGTTACAATTGGACTCCTGCAAAGTCAATTTTGTTACAGTTTGATCATAAAGAAGTTTCGAGATCACAAAATGGTCTTACGGTAGAAAATGGAGTATCTTTGAGCTCTGGACTACACTCTCCTGCACGTGTTCAACTAAATGATCAGTTTTCTTTTGGGAAGGACTATGCTCCGAAGGTCAGGAAACCATACACTATCACAAAACAGAGAGAGAGATGGACAGATGAAGAGCATAAGAAATTCCTTGAAGCTCTAAAGCTGTATGGCAGGGCATGGCGACGTATTGAAGAACATGTTGGCACAAAGACTGCAGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTCTCAAAGGTTCTTCGTGACTCTACAGGGACCAGCACAAGCTCGGTGGAGTCCATTGAAATTCCACCTCCACGACCAAAACGAAAGCCTATGCATCCTTACCCTCGTAAGCTAGTAGAGATCCCTACTAAAGAAATTTCCAACACAGAACAGGCAATGAGGTCTAATTCTCTGAAGTCATCTGAATTTGATCAAGAAAACCAGTCTCCCAAATCAGTATTATCTGCTGTTGGTTCAGACACCCTTGGTTCCTCTGATTCAGATATACATAATGGAAGTCTATCTGAGGAAGATGGTTCTGCACCAAATGCTGGTTCATCTCTTGATGAGCAAACTCTTGCGAAATTGGAGCTCTTCCCCAGAGAGAGTGCTTCTACGAAAGAAGACGCAGCAGAAGAATCATGTGGTCGGATTATTAAGCTTTTTGGGACGACTCTACTGGTAACAGATACCTCTCCAACGATGCAGAATTCAGATTTTGCTGAAGCTCCTGCTGCTTTTGCTCCTTGGTGGACTACTTCCCACAATAGGAAACATCTAGAATCTAACATTGGGGAAGTTGATGATAAAGTTGAAAAGGAAGTATCTTGGAGTGGTTCAAACATTACTAGCTCAATTAATGATGGGGAGAATGATGAAAAATCAGATGTTCAAGCCAAAAGTCACATGCATTTTTTAAGGAAGGAAAAATTGGACCTTCTTGGCCACTCGACAACACCTACTGAAACATCAGCCCTATCTGAAATAAGGGAGAGGCCTAAAGGGTTTGTGCCATATAAAAGATGCATTGCAGAGAGAGAAAACCAACCCTTGCCAGTAACAGCAGAGGAGAGGGACGGCCAACGCATTCGCCTTTCATTATAG 1560 0.4263 MSFDESHKIPTSSRDFDRGSQTRSIFTRPHSSPLFYVLSIPHLPLLLFFSFSSLLYSQASSFFFVSLVLLNTVTLFPLPAVDSDVLVYKISVKIKNEQSICYDKSSLSVAKNAYIPEMGYNWTPAKSILLQFDHKEVSRSQNGLTVENGVSLSSGLHSPARVQLNDQFSFGKDYAPKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSTGTSTSSVESIEIPPPRPKRKPMHPYPRKLVEIPTKEISNTEQAMRSNSLKSSEFDQENQSPKSVLSAVGSDTLGSSDSDIHNGSLSEEDGSAPNAGSSLDEQTLAKLELFPRESASTKEDAAEESCGRIIKLFGTTLLVTDTSPTMQNSDFAEAPAAFAPWWTTSHNRKHLESNIGEVDDKVEKEVSWSGSNITSSINDGENDEKSDVQAKSHMHFLRKEKLDLLGHSTTPTETSALSEIRERPKGFVPYKRCIAERENQPLPVTAEERDGQRIRLSL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2052 519 CDD SANT 190 233 IPR001005 -
Dere04g2052 519 ProSiteProfiles SANT domain profile. 186 237 IPR017884 -
Dere04g2052 519 SUPERFAMILY Homeodomain-like 182 235 IPR009057 -
Dere04g2052 519 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 237 IPR017930 -
Dere04g2052 519 FunFam protein REVEILLE 6 isoform X1 190 238 - -
Dere04g2052 519 MobiDBLite consensus disorder prediction 243 339 - -
Dere04g2052 519 MobiDBLite consensus disorder prediction 254 271 - -
Dere04g2052 519 MobiDBLite consensus disorder prediction 503 519 - -
Dere04g2052 519 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Dere04g2052 519 MobiDBLite consensus disorder prediction 276 339 - -
Dere04g2052 519 PANTHER SWI/SNF COMPLEX-RELATED 147 434 - -
Dere04g2052 519 Pfam Myb-like DNA-binding domain 188 231 IPR001005 -
Dere04g2052 519 SMART sant 187 235 IPR001005 -
Dere04g2052 519 Gene3D - 190 236 - -
Dere04g2052 519 MobiDBLite consensus disorder prediction 1 23 - -
Dere04g2052 519 NCBIfam myb-like DNA-binding domain, SHAQKYF class 186 235 IPR006447 GO:0003677
Dere04g2052 519 MobiDBLite consensus disorder prediction 499 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2052 Dere-ChrDere04 23520536 23523886 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere04g2052 Myb_DNA-binding 1.3e-13 CL0123