Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2050 ATGGCTGACGAGGATTCCTTCCCAGCCTTCCCATTTGATAGAGCTGTTGAGCAGGCTATTGTATCTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACATAGAGGAAAGCCCAAGCTCTGCCCCTTTAGACTTTCTCCGGATGAGAAAATTTTGATTTGGTATTCCGGACAGCAGGAGAAGCATTTGCAATTGAGCTCAGTTACAAAAATTGTGGAAGAGCAGAAAAATATAAGGTCCCAGAGGAAAAGCCAACTTGAAAAGGAGTCCCATTCATTTTCACTAATCTATGCTAATGGTGAACGCTCACTTGATCTGATATGCAAGGACAAAGCACAAGCTTCTTCTTGGTTAGTGGGCTTGAGAGCTGTTATATCTAGGTCCCAGCATCCAAGATCGTTAAGTAGTTTAAGGAGCTGCAAAGGGGTGCAGAGTTGTGTAAGTAGTCCAGCCGGAATCTTTCGAAGAAAGAAAAATCTTGGTCTTCTGGAAGATTCTGCCGAATTTACTCAGGTACATAGCTTATGTGCAAGTCCTAATTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTATCCTATGCTTCAGATAGCTTTTATTCATCAGAGCCTTTCTTATACAATACTCAGAGGGTAACAGATATTTCAGCAATAAGTTCTCCATATGTTGATCCAGATCTTCTCAGTAGGAGTGGATCAACTTATGCTGACACAGAGTACAAGAAGATTGCGCCCTATAGGAGTCCACCTCCGCATACCTCCCCACATGTAGAAAGCAAAAATGTGTTGAAGGATGTCATGGTCTGGGGTGAAAGGATTGGAGGGATTGTATGGAGTGGTAATAACAGTTTTGTAAAGCAACACAATATTCATACTGTATTGCCAAAGTTACTGGAATCCACTGTGATGTTAGATGTACAGAACATAGCCTTAGGTGGTAAACATGCTGCCTTAGTCACAAAACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGAAAGGGGGAAGGCTGGGGCACAAAATTAACCTCGATGTGAGCTCTCCCAAAATTGTTGATTCTCTTAGAGGGATCCATATAAAATATGTTGCCTGTGGTGAGTATCATACATGTGCTCTGACAGATGCCGGTGTAGTATATACATGGGGGAACGATGGTAGTTGTACAGATTCTGGTGGTTATGGGAGAAATGGAAGTCAGTGGATACCACATAAACTTACAGGACCTTTAGATGGTATTTGTATATCTAGCATTGCTTGTGGGGAATGGCATACAGCAATTGTCTCTTGCTGTGGAAGATTATTTACATATGGAGATGGCACTTTTGGAGCCCTTGGGCATGGAAATCTTCAGAGCATTTCTCAACCAAAAGAAGTTGAGTCTCTTAGAAGTCTACGAGTGAGGTCTGTTGCCTGTGGATCCTGGCATACAGCAGCTATTGTAGAAGTCATAGCTGCCCGTTTTAGGTACAATACTGCTTCTGGTAAGCTGTTTACTTGGGGTGATGGAGATGAAGGGTGGCTTGGTCACGCTGATAATGGAAGGAAGCTTTTACCAACATGTGTTGCACAACTTGTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTTGCACTTACTAATTTGGGCAAGGTTTTTACCATGGGAAGTATGGTGCATGGACAGCTAGGAAGCTTACATGCCAAGGATAACACTGTGACTCTTGTCGAAGGACACCTGAAACAGGAATTTGTTAAGGAGATATCATGTGGTTCATTTCATGTGGCTGTGTTGACAACTGCAGGGAGTGTCTATACATGGGGCAAGGGTACAAATGGGCAGCTAGGATTGGGTGATACTGAAGACAGACACTCACCTTCCTTTGTTGAGGCTCTAAGAGATAGGCAGATAGAGAGTATTGCTTGTGGGTCATGCTTCACAGCTGCAATATGTTTACACAAACCTGTTTCTATTACTGATCAGTCAGCTTGTAGCAGTTGTAAGTTTCCATTTGGGTTCAGGAGAAAGAAGCATAACTGTTATAACTGTGGTCTTCTCTTCTGCCATCCATGTAGTACTAACAAGGTTACAAATGCATCTCTAGCACCTAATAAGAGCAAGGCTTCTCGGGTCTGTGATCAATGCTTTAATAAATGGCAAGTAATTACACACTCAGCTACAGAGTCCAAGTTGCAAAAATACAACACCCAGCAGCAACTGAAGCATCAGAATAAATTTCCTGATCTGACAGAAGATAGAGGAGAACCGGCTGAAACAATGGGTCCTCTGTTGTCTCTTGGTCAATCGTGTTACATGAAAAGCATGCCTAGCGGAAGGAAAGACTGGAAAAATCAACAAGAAAGACGGAAACATTTAGAAAATTTTTCTTCAGCGTTGGGGGGTGTGCCACAATGGGGGCAGGTTCCCTGCCCTGCTGTATTTAGAACAAATTGTACAGAAATTTCTTTTGTGCATGTTTCTTCATTGAAAAATAAATTAGCTTCTGCTAATCCAATGAATTTAGAATCTACAGTATCCAGGATCCCTAATGCAGGGAGAGATATACCAAAGTCTGATAAATTGCTAATAGAAGAAGTTCAGAGGCTGAGAGCTGTGGCTAGGAAGCTCGAGGAGCAATGTGAGCTCAAAAACCATATATTACAAGAATGCCATCGAAAGATTGAGGAGAGTATGTTGTTGGCAAGGGAGGAAGCTGCTAAGTGTAAGGCAGCCAAAGAGGTCATAAAAGCTTTGACATCAAAACTTCATACAATATCAGGAACAGCCAATGCGGCACAAGAAGAAAAGGTTGTGGTACAGGAATGTCTGCCTTATCTTTCATCCATACATACCAGTATCCATACTCCAAAAGATTCCAACTTGGACAGTCAATCTAATTCCCCTATAGTATTCTCTGGCAAATTAAAATCCAAATTTGGGAAAAGTATGTTCTTCCAAAGTGATAAATCAAGGGAAGGCTGTCCCTTCACCGGAGTAGAATCTCGACAAGACAGCGCCAAAGGATCAAAGGTTGAATGGATAGAACAGTATGATCCTGGTGTATACATCACACTTACTACCTTACCATGTGGGCAAATAGGCCTCAGAAGAGTGAGATTCAGCCGGAAACGATTCTCTGAAAAAGAAGCTGAGCGATGGTGGGAAGAGAATCAAGTGAGTGTGTACCGTAAGTATGAGATTGAAGGGTACATAAACAGTAGCCAAACTCAGGCGTAA 3222 0.4221 MADEDSFPAFPFDRAVEQAIVSIKKGAYLLKCGHRGKPKLCPFRLSPDEKILIWYSGQQEKHLQLSSVTKIVEEQKNIRSQRKSQLEKESHSFSLIYANGERSLDLICKDKAQASSWLVGLRAVISRSQHPRSLSSLRSCKGVQSCVSSPAGIFRRKKNLGLLEDSAEFTQVHSLCASPNLSLSERCFSDGLSYASDSFYSSEPFLYNTQRVTDISAISSPYVDPDLLSRSGSTYADTEYKKIAPYRSPPPHTSPHVESKNVLKDVMVWGERIGGIVWSGNNSFVKQHNIHTVLPKLLESTVMLDVQNIALGGKHAALVTKQGEVFCWGQGKGGRLGHKINLDVSSPKIVDSLRGIHIKYVACGEYHTCALTDAGVVYTWGNDGSCTDSGGYGRNGSQWIPHKLTGPLDGICISSIACGEWHTAIVSCCGRLFTYGDGTFGALGHGNLQSISQPKEVESLRSLRVRSVACGSWHTAAIVEVIAARFRYNTASGKLFTWGDGDEGWLGHADNGRKLLPTCVAQLVDYDFVQVSCGRMLTVALTNLGKVFTMGSMVHGQLGSLHAKDNTVTLVEGHLKQEFVKEISCGSFHVAVLTTAGSVYTWGKGTNGQLGLGDTEDRHSPSFVEALRDRQIESIACGSCFTAAICLHKPVSITDQSACSSCKFPFGFRRKKHNCYNCGLLFCHPCSTNKVTNASLAPNKSKASRVCDQCFNKWQVITHSATESKLQKYNTQQQLKHQNKFPDLTEDRGEPAETMGPLLSLGQSCYMKSMPSGRKDWKNQQERRKHLENFSSALGGVPQWGQVPCPAVFRTNCTEISFVHVSSLKNKLASANPMNLESTVSRIPNAGRDIPKSDKLLIEEVQRLRAVARKLEEQCELKNHILQECHRKIEESMLLAREEAAKCKAAKEVIKALTSKLHTISGTANAAQEEKVVVQECLPYLSSIHTSIHTPKDSNLDSQSNSPIVFSGKLKSKFGKSMFFQSDKSREGCPFTGVESRQDSAKGSKVEWIEQYDPGVYITLTTLPCGQIGLRRVRFSRKRFSEKEAERWWEENQVSVYRKYEIEGYINSSQTQA 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2050 1073 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 918 - -
Dere04g2050 1073 Pfam FYVE zinc finger 655 714 IPR000306 GO:0046872
Dere04g2050 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Dere04g2050 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 597 645 IPR000408 -
Dere04g2050 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Dere04g2050 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Dere04g2050 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Dere04g2050 1073 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 653 715 IPR017455 -
Dere04g2050 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 725 IPR013083 -
Dere04g2050 1073 Gene3D - 248 387 IPR009091 -
Dere04g2050 1073 Gene3D - 482 648 IPR009091 -
Dere04g2050 1073 Gene3D - 388 481 IPR009091 -
Dere04g2050 1073 Coils Coil 854 874 - -
Dere04g2050 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Dere04g2050 1073 ProSiteProfiles BRX domain profile. 1006 1061 IPR013591 -
Dere04g2050 1073 Pfam Transcription factor regulating root and shoot growth via Pin3 1006 1060 IPR013591 -
Dere04g2050 1073 PRINTS Chromosome condensation regulator RCC1 signature 592 613 IPR000408 -
Dere04g2050 1073 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Dere04g2050 1073 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Dere04g2050 1073 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Dere04g2050 1073 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Dere04g2050 1073 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Dere04g2050 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Dere04g2050 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Dere04g2050 1073 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Dere04g2050 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Dere04g2050 1073 Gene3D - 15 132 IPR011993 -
Dere04g2050 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 597 648 IPR000408 -
Dere04g2050 1073 Pfam Transcription factor BRX N-terminal domain 898 917 IPR027988 -
Dere04g2050 1073 SUPERFAMILY FYVE/PHD zinc finger 654 728 IPR011011 -
Dere04g2050 1073 CDD PH_PLC_plant-like 14 126 - -
Dere04g2050 1073 SUPERFAMILY RCC1/BLIP-II 262 649 IPR009091 -
Dere04g2050 1073 SUPERFAMILY PH domain-like 15 125 - -
Dere04g2050 1073 SMART fyve_4 647 716 IPR000306 GO:0046872
Dere04g2050 1073 Pfam Pleckstrin homology domain 17 123 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2050 Dere-ChrDere04 23497703 23506211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2050 967 1065 Major Intrinsic Protein MIP AT1G31880 34.343 5.24e-11 63.9