Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2047 ATGGTAGAAGAAGAACAACGTAGCCTGGCAAGCTTCTTAAGATGGGCGGCAGAGCTTGGAATATCAGACGCTGCTATAGCCAATCAACCTCAGCATTCTCTTTCCTGTTTGGGTTATTCTCTTTGTGTCTCCCATTTTCCTCATTCTGGCGGTAGAGGTTTGGGCGCTGTGCGAGACCTTAGGAGAGGAGAATTGATCCTCCGAGTTCCAAAATCTGCCCTGTTGACAGCAGAGAATGTGATGGAAGATAAGAAGCTCTCCATTGCTGTCAATAGCCACCCATATCTCTCCTCTGCTCAGATATTGATCGTTTGCTTATTATATGAAATGAGCAAAGGAAGATCTTCAAAGTGGCATCCTTACCTCATGCATTTGCCGCAGACTTATGACATACTAGCTACTTTTGGTGAATTTGAGAAACAAGCTCTCCAAGTGGATGAGGCTCAGTGGGTCACGGAAAAGGCTGTATTAAAAGCCAAATCAGAGTGGAAAGAAGCCAATGCTTTGATGGAAGAAATCATGCTCAAGTCCCAACTCTTAACATTTAAGGCATGGCTTTGGGCAACTGCAACGATATCCTCCCGGACATTGCACATACCATGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAAAGGAGCCATCTGGTGCTGACGATCAGGAGATTTTACTGTCCAACTCTTCCGTCCAAGTCACATCTGTGTCAAATGTAGACAGTGCAGTAATGTCAGATGCTGAGCAGCTTGATTCTCATTTCCAGAGACTAACAGATGGTGGGTTTGAGGAAGATGTTAATTCATATTGCTTTTATGCTAGGGAAAATTACAAGCAAGGAGAGCAGGTTTTATTATGCTATGGACTGTACACAAATTTAGAGCTTCTTGAACACTATGGTTTTCTCCTACAAGAAAATCCGAATGACAAAATTTATATTCCTTTAGAATATGATGTATATTCTTCCAGTTCATGGCCTAAAGAGTCACTTTATATTGATCATAACGGGAAGCCCTCCTTCTCATTACTGTCTGCATTGAGGTTGTGGGCAACCCCTAAAAGTAAGCGGAGGTCTGTTGGACATCTTGTATACTCTGGTTCTCAACTATCTGCAGACAATGAAATTGTTGTCATGAAATGGCTGTCAAAGACTTGCGATGCTGTATTGAAGGGTTTGCCAACATCAATTGATGAAGACGCAATACTACTGCATGCAATGTATAATAGTCAAGATTTTTGTACTTTCATGGAGATCACAAAACTATTGTCTTCTAGGGATGAGATTTGTGCCTTTTTAGAATCTTATAATCTGCGGGATGGACATGATTTAACTGATATACTTATATCTAGGAAAGCTAGAAGGTCCATGGACAGATGGAAATTGGCTATTCGATGGAGGCTCAGGTATAAGAAAGTCCTTGTGAATTCTATCTCTCATTGTAATGAAATACTTGATTCTCTATTGACATAA 1491 0.4131 MVEEEQRSLASFLRWAAELGISDAAIANQPQHSLSCLGYSLCVSHFPHSGGRGLGAVRDLRRGELILRVPKSALLTAENVMEDKKLSIAVNSHPYLSSAQILIVCLLYEMSKGRSSKWHPYLMHLPQTYDILATFGEFEKQALQVDEAQWVTEKAVLKAKSEWKEANALMEEIMLKSQLLTFKAWLWATATISSRTLHIPWDEAGCLCPVGDLFNYDAPGKEPSGADDQEILLSNSSVQVTSVSNVDSAVMSDAEQLDSHFQRLTDGGFEEDVNSYCFYARENYKQGEQVLLCYGLYTNLELLEHYGFLLQENPNDKIYIPLEYDVYSSSSWPKESLYIDHNGKPSFSLLSALRLWATPKSKRRSVGHLVYSGSQLSADNEIVVMKWLSKTCDAVLKGLPTSIDEDAILLHAMYNSQDFCTFMEITKLLSSRDEICAFLESYNLRDGHDLTDILISRKARRSMDRWKLAIRWRLRYKKVLVNSISHCNEILDSLLT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2047 496 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 305 422 IPR036464 -
Dere04g2047 496 SUPERFAMILY SET domain 8 313 IPR046341 -
Dere04g2047 496 CDD SET_LSMT 40 309 - -
Dere04g2047 496 Pfam Rubisco LSMT substrate-binding 344 480 IPR015353 -
Dere04g2047 496 Pfam SET domain 51 295 IPR001214 GO:0005515
Dere04g2047 496 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 430 - -
Dere04g2047 496 Gene3D - 315 495 IPR036464 -
Dere04g2047 496 Gene3D set domain protein methyltransferase, domain 1 6 309 - -
Dere04g2047 496 ProSiteProfiles SET domain profile. 39 295 IPR001214 GO:0005515
Dere04g2047 496 FunFam Protein SET DOMAIN GROUP 40 9 309 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2047 51 323 NAC Transcription Factor Family AT3G56570 23.529 1.31e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere04g2047 SET 2.4e-11 No_clan