Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2033 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGGGGAGGAGGGGAGAAGAAATGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCCTTGTGTCCCTACCGACTGAAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCAGCCACAACTAACAGAGAAGTTGATGGGCATATACCCAATTACCCGAGCTTGCCACCTCAGTTAATTTGCCAACTTCATCATGTCACAATGCATGCTGATGTCGAGACAGATGAAGTGTATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTTTGGAATTGGGCATTCCGAGTAAGCAGCCCTCAAATTATTTTTGTAAGACATTGACTGCCAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCTCCTGCACAAGAACTAATTGCTAGGGACCTCCATGATGTTGAATGGAAGTTTAGACATATTTTCCGGGGACAACCAAAACGGCACCTTCTTACAACTGGCTGGAGTGTATTTGTTAGTGCTAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTTATATGGAATGAAAAGAATCAGCTTCTATTAGGAATACGCCGTGCCAGTCGGCCACAAACTGTGATGCCATCATCAGTTCTTTCAACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCTGCGACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGGGCTAGTCCCTCTGAGTTTGTCATACCGCTGTCGAAATATGTCAAAGCCGTGTATCATACACGTGTTTCAGTCGGCATGCGATTCAGGATGCTTTTTGAGACTGAGGAATCAAGTGTACGCAGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATCCTGTTCGTTGGCCAAACTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGATAGGCAGCCACGGGTATCACTGTGGGAAATTGAGCCTTTGACAACATTCCCAATGTATCCATCTCTATTTCCCCTTAGATTGAAACGCCCATGGCATCCTGGCCCCTCATCTTTGCATGATGGCAGAGACGAAGGAGGACTAATGTGGCTGAGAGGTGCACCTGGAGATCAAGGTCTGAACTCCCTAAATTTTCAAGGTGCTGGTTTGTTGCCTTGGATGCAGCAGAGGCTGGATCCAACTTTGCTAGGAAATGACCATAATCAACAGTATCAAGCCATGTTGGCAGCTGGTTTGCACAACCTTGGGAGTGGAGATCTCTTGCGTCAACAAATGATGCATGTGCAACAACCCTTCCATTATCTTCAACAATCAGGAAGCCATAATTCTCTGCAGCTTCAGCAGCATCAAGCAATTCAGCAATCTTTGAGTTCTAATATCTTGCAGCCACAAGCCCAAGTGTTGCCGGAGAACCTGTCTCAGCACCTCCTCCAGAAACCACATAACAATCAAGAAGACCAAGCACAGCAGCAGCAGCAACAGCAGCAGAATAATTATCATGATACATTTTTGATTCAGGGTGATCAGCTCCAACAGAGGCAACACTCTCATGCACCGTCACCTTCATATTCAAAACCTGATTTCTTAGATTCAAGCATGAAGTTCTCAGCAGTCTCCCCTGGACAGAACATTCTCGGTTCACTGTGTCCTGAAGGGAGTGGCAATGCTTTTAACTTATCCAGAACCAGTCAGTCCATGCTGACTGAACAATTACCTCAGCAATCATGGACTCCAAAGTATGCACCTGTGCAGGTTAGTGCTGCCTTTGGCAACTCAATTTCACACGCACAGTATACTGGAAAAGATTCTGCAATGGTGCCATCGCATTGTACTACAGATGCCCAAAATCCTACTCTGTTTGGCGTTAATATTGATTCCTCTGGACTTCTGCTCCCCACTACTGTCCCTGGTTATACATCTTCATCAGTTGGTACTGATGCATCAACCATGCCATTAGGGGAGGCTGGATTCCAGGGTCCTTTATATGGTTGCATGCAAGACTCATCAGAGTTGCTGCAAAGTTCTGGGCAAGTTGACCCACAAAACCAGACTCAGACATTTGTCAAGGTTTACAAAGCAGGTTCAGTTGGGCGCTCACTTGACATCTCCCGGTTCAGTAGCTATCATGAGCTGAGAGAAGAGTTGGCCCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCCTTCGTCAATAATGTTTGGTATATCAAGATCCTTTCACCTGAAGATATTCTGAAAATGGGCGAGCAAGCGGTGGAATCGCTTGGTCCAAATGTGGGTCAAAGGATCAATAGCAGCAGTGCAGAATCTCAGAACCTTTCCGGGTTTCCATCAATGGGCTCGCTTGAATACTGA 2538 0.4649 MKLSTSGLGQQGHEGGGGEKKCLNSELWHACAGPLVSLPTEGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHHVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPLELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGPSSLHDGRDEGGLMWLRGAPGDQGLNSLNFQGAGLLPWMQQRLDPTLLGNDHNQQYQAMLAAGLHNLGSGDLLRQQMMHVQQPFHYLQQSGSHNSLQLQQHQAIQQSLSSNILQPQAQVLPENLSQHLLQKPHNNQEDQAQQQQQQQQNNYHDTFLIQGDQLQQRQHSHAPSPSYSKPDFLDSSMKFSAVSPGQNILGSLCPEGSGNAFNLSRTSQSMLTEQLPQQSWTPKYAPVQVSAAFGNSISHAQYTGKDSAMVPSHCTTDAQNPTLFGVNIDSSGLLLPTTVPGYTSSSVGTDASTMPLGEAGFQGPLYGCMQDSSELLQSSGQVDPQNQTQTFVKVYKAGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDILKMGEQAVESLGPNVGQRINSSSAESQNLSGFPSMGSLEY 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2033 845 SMART B3_2 130 232 IPR003340 GO:0003677
Dere04g2033 845 SUPERFAMILY CAD & PB1 domains 713 794 - -
Dere04g2033 845 CDD B3_DNA 129 230 IPR003340 GO:0003677
Dere04g2033 845 Gene3D - 128 231 IPR015300 -
Dere04g2033 845 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 809 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere04g2033 845 FunFam Auxin response factor 128 232 - -
Dere04g2033 845 Gene3D - 294 366 - -
Dere04g2033 845 MobiDBLite consensus disorder prediction 824 839 - -
Dere04g2033 845 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Dere04g2033 845 Pfam AUX/IAA family 716 804 IPR033389 -
Dere04g2033 845 MobiDBLite consensus disorder prediction 544 564 - -
Dere04g2033 845 Gene3D - 716 809 - -
Dere04g2033 845 MobiDBLite consensus disorder prediction 824 845 - -
Dere04g2033 845 FunFam Auxin response factor 715 809 - -
Dere04g2033 845 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere04g2033 845 FunFam Auxin response factor 294 366 - -
Dere04g2033 845 ProSiteProfiles PB1 domain profile. 720 804 IPR000270 GO:0005515
Dere04g2033 845 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Dere04g2033 845 SUPERFAMILY DNA-binding pseudobarrel domain 114 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2033 Dere-ChrDere04 23298229 23305947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2033 100 817 B3 DNA Binding Superfamily AT5G37020 69.326 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere04g2033 AUX_IAA 8.4e-08 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g2033 04 23298229 23305947 Dere04g2033 04 23298229 23305947 ECH