Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2028 ATGGCAGCCGCGGTAGCTCAAACTCACAGTCATGACCTCATTGAGCCAGTCAACGAGGTCAAGCTCTTCAATCGTTGGACATTCGAGGATGTTCAGGTGAATGACATATCTTTGGCTGATTACATTGGTGTGGCTCCTGCCAAGCATGCAACCTATGTTCCACACACTGCTGGGAGATATTCAGTTAAGCGTTTCAGGAAAGCACAATGCCCTATTGTGGAGAGGCTTACCAACTCTCTGATGATGCATGGACGAAACAATGGGAAAAAGCTGATGGCAGTGAGGATCATAAAGCATGCCATGGAAATTATCCACTTGCTCACCGATCAAAATCCCATCCAAGTTATTGTTGATGCTGTGATCAACAGTGGACCAAGGGAAGATGCTACACGTATTGGGTCTGCTGGTGTTGTCAGACGTCAGGCAGTGGATATTTCTCCCCTGCGTCGTGTAAATCAGGCAATTTATCTCCTTACAACGGGTGCTCGTGAGGCTGCATTTAGGAACATTAAGACAATTGCCGAATGCTTGGCTGATGAGCTTATCAATGCTGCAAAGGGGTCATCTAACAGTTATGCCATTAAGAAGAAGGACGAGATCGAGAGAGTTGCCAAGGCAAACCGTTGA 627 0.4673 MAAAVAQTHSHDLIEPVNEVKLFNRWTFEDVQVNDISLADYIGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2028 208 Pfam Ribosomal protein S7p/S5e 62 208 IPR023798 -
Dere04g2028 208 FunFam 40S ribosomal protein S5 4 208 - -
Dere04g2028 208 PANTHER RIBOSOMAL PROTEIN S7 4 208 IPR000235 GO:0006412
Dere04g2028 208 NCBIfam 30S ribosomal protein S7 19 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Dere04g2028 208 ProSitePatterns Ribosomal protein S7 signature. 74 100 IPR020606 GO:0003723|GO:0003735|GO:0006412
Dere04g2028 208 SUPERFAMILY Ribosomal protein S7 21 208 IPR036823 -
Dere04g2028 208 CDD uS7_Eukaryote 21 208 IPR005716 GO:0003735|GO:0006412|GO:0015935
Dere04g2028 208 Gene3D Ribosomal protein S7 domain 2 208 IPR036823 -
Dere04g2028 208 Coils Coil 205 208 - -
Dere04g2028 208 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 208 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2028 Dere-ChrDere04 23267647 23269462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2028 3 208 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 86.893 7.37e-135 375