Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2014 ATGGAGGCGGTTCTCAAGAAATTCTTCGGGTTTTCTGAGTTTCGGCCTTATCAGAAGGATGTTATCGAGAAAATCATCGAGAAAAGGGACTGCTTGGTAGTCATGGCCACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCATTGGTTGTTAGAAGGACTGGGATAGTTGTCAGCCCTCTTATTTCATTAATGCAAGACCAGGTAATGGCTTTGAAACAACGAGGTATCAGAGCTGAGTATCTTGGAAGTGCTCAGACAGATCCGACGGTCCAGACTAAAGCTGAGAGTGGCCAATTTGACATTCTTTTCATGACTCCTGAGAAGGCATGCTTAATTCCTACCGGCTTCTGGTTGAACTTGCAAAAGTCAGGAATTTGTCTTTTTGCCGTTGACGAGGCACATTGCATATCAGAGTGGGGCCATGATTTTAGGGTGGAGTACAAGCAGTTGGATAAGTTACGCGGTGTTCTATCAGATGTTCCCTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGACATCATCAGTTCCTTGAAGATGCATAATCCTTATGTTTCAGTTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAGCCTTTTAACCACGGACAACATTTTGTTAATGAGCTTGTGCGAGAAATTTCAAAAAATGTAGCTAGTGGTGGTTCAACTATAATCTACTGCACTACAATTAAAGATGTTGAGCAGGTTTCCAAGTCACTTTTGGAAGCAGGTGTTGCAGCTGGGATGTACCATGGGCAAATGAATAAAAAAGCTCGTGAGGAATCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTAGCCACTGTTGCTTTTGGTATGGGTATAGATAAGCCTGACATAAGACAGGTGATACACTATGGTTGCCCTAAGAGCCTGGAGTCCTACTACCAGGAAAGTGGTCGATGCGGTCGAGATGGTATAGCTTCTGTCTGTTGGCTTTACTACACAAGAAATGACTTTGCAAAGGGCAACTATTATTGTGGAGAATTACAAACAGAAAAGCAAAGAAGAGCTGTCATGGAGTCATTGATGGCTGCTGAACGCTATTGTTTGCTGACAACCTGCAGAAGAAAGTTCTTGCTTGAATACTTCGGGGAAAAAGTTTCAGCTGATAGATGTGGAAATTGTGATAACTGCACTGTCTCAAAGAAGGAGCGTGACATGTCAAGAGAAGTATATCTTCTACTAGCTTGCATTCAGTCCTGCAGGGGTACATGGGGCCTCAATATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGATACTCAGTTTGACAAGCTTCCACTTCATGGTCTTGGGAAAGGTTACCCATCTAATTGGTGGAAAGCACTTGGACATCAACTAATTTCTCATGGTTATTTGAAGGAGACTGTCAATGATGTGTACAGAACTGTGAGCGTTGGTTCAAAGGGAGAGCAATTTTTGGCCTCTTCTACACCAGATTATCAACCACCCTTAGTTTTGTCGGTGACTACTGAAATGCTTGATGAAGAGGAAAATAGAGGTGCACCAGAAGAACTTAAAATTTTAGCCACTTCAGAAACTGAGGGTTTTTCAGAGGCTGAGAGACGACTCTACCAAATGCTTTTGGAAGAGAGATTGAGAGTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATATGTGGTGATAAAACGATCAAGAAAATTGCACTGGCAAGACCATCTACAAAAGCGAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAATGAAATATGGAGATCATTTTCTTCTAGTTATTCAACAATTGTCACAAGGATTGAACCTTTCATTGGACGGAGAAGCAAGCTTGCAAACTGCTGCTGCTGCAGTAAGGAAAGTGTCCTCCCAAAGTTTAACCAATGAATCAAAGAAGTTGACACCGGCAAAGTTTGAGGCCTGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACCGTCCAGGTAGATCAGCTCCTATAAAAGAACAGACTGTTGCTGATTATCTGCTGGAAGCTGCCCAAGAAGGATTGCCTTTTGATTGGACTCGATTCTGTGAGATGGTTGGACTGACACCTGAGATCATCTCAGAAATTCAGGGTGCTATTCTAAAGGTTGGATCTACAGAAAAATTGAAGCCTATAAAAAACGAATTACCAGATGATGTAAGTTATCTGCACATCAAGACTTATTTGGGAATGCAGAACTCTGGAATACCTCTGCAAGGCATCCCACGTGGAAACAGCCAAGCAGCGAAAGATGGCAAACTCGTGAAGGAGGCATCAGATTTATCACAGCATCCATCAGATACTTGCCACATGGGAATGTATAGTGAAATTGATATATCTCCTGAGAGTTCGATGAAAAAATGTGACCTAGAAATGGATGAGGAATCGATTGGACCTGCCAATGGTTGCCAGGTACAGATTCTTCCATTATTCTCTGAGGAATTCACAAAGAAACGTCAAAAAGTCAGTGAACCAAAGGAAGAAAATGCTATCAAATTGATAGCATCAGAGAGTTCCTTAGTAGATTGGCTGAAGAACCATGAAGGGGTTACGTTGAACGATATTCTGAAGCACTTCAACGGGTCCAGTGAATATTCTGTGGTTGAACTACTGAATTGCCTTGAGAGTGAGTTTTTAATCTACAAGAAAAATGGCATGTACAGGCTTATGTAA 2739 0.4217 MEAVLKKFFGFSEFRPYQKDVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVRRTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQTDPTVQTKAESGQFDILFMTPEKACLIPTGFWLNLQKSGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIISSLKMHNPYVSVGSFDRTNLFYGVKPFNHGQHFVNELVREISKNVASGGSTIIYCTTIKDVEQVSKSLLEAGVAAGMYHGQMNKKAREESHRLFVRDELQVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRNDFAKGNYYCGELQTEKQRRAVMESLMAAERYCLLTTCRRKFLLEYFGEKVSADRCGNCDNCTVSKKERDMSREVYLLLACIQSCRGTWGLNMPIDILRGSRAKKILDTQFDKLPLHGLGKGYPSNWWKALGHQLISHGYLKETVNDVYRTVSVGSKGEQFLASSTPDYQPPLVLSVTTEMLDEEENRGAPEELKILATSETEGFSEAERRLYQMLLEERLRVARSVGTAPYAICGDKTIKKIALARPSTKARLANIDGVNQHLVMKYGDHFLLVIQQLSQGLNLSLDGEASLQTAAAAVRKVSSQSLTNESKKLTPAKFEAWKMWHEDGLSIQMIANRPGRSAPIKEQTVADYLLEAAQEGLPFDWTRFCEMVGLTPEIISEIQGAILKVGSTEKLKPIKNELPDDVSYLHIKTYLGMQNSGIPLQGIPRGNSQAAKDGKLVKEASDLSQHPSDTCHMGMYSEIDISPESSMKKCDLEMDEESIGPANGCQVQILPLFSEEFTKKRQKVSEPKEENAIKLIASESSLVDWLKNHEGVTLNDILKHFNGSSEYSVVELLNCLESEFLIYKKNGMYRLM 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2014 912 Pfam HRDC domain 544 610 IPR002121 GO:0003676
Dere04g2014 912 Pfam RecQ zinc-binding 348 397 IPR032284 -
Dere04g2014 912 FunFam ATP-dependent DNA helicase 197 398 - -
Dere04g2014 912 SUPERFAMILY "Winged helix" DNA-binding domain 395 501 IPR036390 -
Dere04g2014 912 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dere04g2014 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 337 IPR027417 -
Dere04g2014 912 Gene3D - 197 398 IPR027417 -
Dere04g2014 912 Pfam Helix-turn-helix domain 655 751 IPR029491 -
Dere04g2014 912 SUPERFAMILY HRDC-like 539 615 IPR010997 GO:0000166|GO:0044237
Dere04g2014 912 Gene3D - 1 195 IPR027417 -
Dere04g2014 912 SMART ultradead3 10 205 IPR014001 -
Dere04g2014 912 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Dere04g2014 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 368 IPR001650 -
Dere04g2014 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Dere04g2014 912 CDD SF2_C_RecQ 197 332 - -
Dere04g2014 912 Pfam RQC domain 401 498 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dere04g2014 912 SMART hrdc7 540 620 IPR002121 GO:0003676
Dere04g2014 912 SMART helicmild6 242 323 IPR001650 -
Dere04g2014 912 FunFam ATP-dependent DNA helicase 399 523 - -
Dere04g2014 912 NCBIfam RecQ family ATP-dependent DNA helicase 4 455 IPR004589 GO:0004386|GO:0006310
Dere04g2014 912 Gene3D - 399 524 IPR036388 -
Dere04g2014 912 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Dere04g2014 912 PANTHER DNA HELICASE RECQ FAMILY MEMBER 3 681 - -
Dere04g2014 912 CDD DEXHc_RecQ 2 196 - -
Dere04g2014 912 Gene3D HRDC domain 535 616 IPR044876 -
Dere04g2014 912 Pfam Helicase conserved C-terminal domain 217 322 IPR001650 -
Dere04g2014 912 FunFam ATP-dependent DNA helicase 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2014 Dere-ChrDere04 23063515 23074555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2014 232 337 Eukaryotic Initiation Factors Gene Family AT3G19760 27.358 1.23e-07 53.1