Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2008 ATGTATTTTTCGAACGTTTGGAAGTATGGAGTTATTCTCAGCTTATGGTTGTCTTGCTATTTGCTTCTGGTTGCTGCGCAGACTGACCCCACCGAAGTTGACGCATTGAAAACAATCAAGGGAAGTTTGATTGATCCTAAAGGAAATCTGAGTAACTGGAATCGTGGAGATCCATGTACATCTAACTGGACAGGGATTTGGTGTTTCAATAGAACATTGACTGATGGCTATTTACATATTAAAGAATTGCGCCTAATGAATTTGAACTTGTCTGGAACCTTGGCACCAGAGATTGGCCGCTTATCTTATATGGAAATATTGAACTTTATGTGGAACAATATAAGTGGGAGTATACCAAAGGAAATTGGCAATGTCAAAAGTTTGAAACTCTTGCTTCTGAATGGAAACCAATTAACAGGTCATCTGCCAGAAGAGCTTGGTTATCTTCCAAATCTGAACAGAATACAAATTGATCAGAACCAAATAACAGGACCTGTACCTACTTCATTTGCTAACCTGAATATGACAAAACACTTCCACATGAACAATAATTCACTTACCGGTCAAATCCCACCGGAGCTTTCCCGCCTAACCAGCCTTCTTCACCTCCTTCTTGACAATAACAAATTATCAGGATATCTACCCCCTGAGCTCTACCAGATGCCAAGCATACGCATAATTCAACTTGACAACAATGACTTTGGCGGGAGTACCATTCCTGATTCTTATGGCAACATGTCAAAACTACTGAAGTTGAGCCTTAGGAACTGCAACTTGCAAGGACCAATCCCTGATTTAAGCAGAATACAAAACCTTCTTTATCTTGACCTCAGTTCCAATCAGTTGAACGAATCGATTCCTAATAGTAAGCTTTCTGAAAGAATCACAACCATCGAGTTGTCAAACAACAAGCTAACTGGAACTATTCCATCCTACTTTTCTGAGCTTCCACGTCTTCAGAAATTGGATTTGCAAAATAATAATCTTACAAGCATATCAGGCAATACTAATCTTCCTCCCAACATCACACTCAGGCTTGAGGGAAATCCTCTTTGTTCAAATGACACTCTAGTTCAGTTCTGTGGATCTTCAAGTGTTAATGACACTAACAACTTAAGTCCAACAAACTCCAATGTTAGTTGTCCTAGTCAAGCATGCCCCCCTCCTTATGAATATTCTAAAACATCTTCTGTGGAGTGTTTCTGTGCAGCGCCATTGCTCATTGGTTATCAGTTGAAAAGTCCTGGATTGTCAGATTTTCCTCCATACCAGAATGCATTTGAGGACTTCCTGTCATCTAGTTATAGTTTACTTATTAGTCAGCTTGATATTAGTAACTATGCATGGGAAGAAGGACCTCGACTGACAATGTACTTGAAGCTTTTTCCTGAAGCTGTTGATAACACAAGCTCCCATAAGTTCAATAGAAGCGAGGTTCTACGTCTTTATAGCATGTTCTCAGGATGGGCTGTTTCTGACAATGATGTGTTTGGACCTTATGAATTACTCAACTTCACTCTTCTGGATCCTTACATAGATATCATTATCACATCACAAAGTTCGGGGATAAGTAAGGGTGCACTGGCTGGCATAATCTTAGGGACGATTGCTGGTGCAGTTACATTATCTGCAATTGTGACTCTTCTTATATTGAGAGTGCGAATGAGAAATTACCATGCAATTTCAAAACAACATTCATCTAGAATCTCAATAAAAATTGATGGTGTGAGGAGTTTCACTTACAGAGAAATGGCCTTGGCTACAAACAATTTTAGTGACTCCAATCTAGCTGGCCAAGGGGGGTATGGGAAGGTTTATAAAGGTATTCTTACCAACGGCACTGTTGTTGCCATAAAACGTGCACAGGAGGGATCACTACAAGGTGAAAGGGAGTTCCTTACAGAAATACAATTACTGTCAAGGTTACATCATCGCAACCTTGTGTCGTTGATTGGATATTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGCCAAATGGGACGCTAAGGGATCATCTTTCTGCTAATTCGAAAGAACCTTTGAGTTTCGCTATGAGATTGAGAATTGCATTAGGGTCAGCTAAGGGTATTCTGTATCTACATACGGAAGCTGATCCTCCAATATTCCACCGAGATGTAAAGGCGAGCAACATATTATTGGACTCTAGATTCATGGCAAAAGTTGCTGATTTTGGGCTTTCACGGCTTGCTCCAGTTCCAGACACTAAAGGAATTGTGCCTGCTCATGTATCTACCGTGGTAAAGGGAACCCCGGGTTATCTTGATCCAGAGTACTTTTTAACTCATAAGTTGACTGAAAAGAGTGATGTTTATAGTCTTGGTGTTGTATTCCTGGAACTTTTGACAGGGAGACCGCCAATCTCACATGGCAAAAATATCGTTAGAGAGGTTAATGTTGCATACCAGTCTGGTGAGATATTCTCGGTTATTGATAGCCGTATTGGGTCACATCATTCTGAATACGTGGAGAAGCTCTTGAACCTGGCCTTGAAGTGTTGCCAAGATGAGCCAGATACACGGCCTAAAATGGCAGAAGTGACTCGAGAGCTCGAAAACTTATGGTCTATGATGCCCGAGTCCAATGCCAATATACCTGAATATATATCCAGTGATTCTGGAAAAATATTCAGTTCACCATCTTCGTCTTCTACTAGTAAGACTCCTTTTATATCGCTAGACGTGTCTGGTAGTGATCTTGCTAGTGGAGTGGAGCCAACCATTAAGCCAAGATAG 2763 0.4057 MYFSNVWKYGVILSLWLSCYLLLVAAQTDPTEVDALKTIKGSLIDPKGNLSNWNRGDPCTSNWTGIWCFNRTLTDGYLHIKELRLMNLNLSGTLAPEIGRLSYMEILNFMWNNISGSIPKEIGNVKSLKLLLLNGNQLTGHLPEELGYLPNLNRIQIDQNQITGPVPTSFANLNMTKHFHMNNNSLTGQIPPELSRLTSLLHLLLDNNKLSGYLPPELYQMPSIRIIQLDNNDFGGSTIPDSYGNMSKLLKLSLRNCNLQGPIPDLSRIQNLLYLDLSSNQLNESIPNSKLSERITTIELSNNKLTGTIPSYFSELPRLQKLDLQNNNLTSISGNTNLPPNITLRLEGNPLCSNDTLVQFCGSSSVNDTNNLSPTNSNVSCPSQACPPPYEYSKTSSVECFCAAPLLIGYQLKSPGLSDFPPYQNAFEDFLSSSYSLLISQLDISNYAWEEGPRLTMYLKLFPEAVDNTSSHKFNRSEVLRLYSMFSGWAVSDNDVFGPYELLNFTLLDPYIDIIITSQSSGISKGALAGIILGTIAGAVTLSAIVTLLILRVRMRNYHAISKQHSSRISIKIDGVRSFTYREMALATNNFSDSNLAGQGGYGKVYKGILTNGTVVAIKRAQEGSLQGEREFLTEIQLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDHLSANSKEPLSFAMRLRIALGSAKGILYLHTEADPPIFHRDVKASNILLDSRFMAKVADFGLSRLAPVPDTKGIVPAHVSTVVKGTPGYLDPEYFLTHKLTEKSDVYSLGVVFLELLTGRPPISHGKNIVREVNVAYQSGEIFSVIDSRIGSHHSEYVEKLLNLALKCCQDEPDTRPKMAEVTRELENLWSMMPESNANIPEYISSDSGKIFSSPSSSSTSKTPFISLDVSGSDLASGVEPTIKPR 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2008 920 SUPERFAMILY L domain-like 41 368 - -
Dere04g2008 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Dere04g2008 920 Gene3D Ribonuclease Inhibitor 30 183 IPR032675 -
Dere04g2008 920 ProSiteProfiles Leucine-rich repeat profile. 318 339 IPR001611 GO:0005515
Dere04g2008 920 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Dere04g2008 920 MobiDBLite consensus disorder prediction 883 904 - -
Dere04g2008 920 CDD STKc_IRAK 598 863 - -
Dere04g2008 920 Gene3D Ribonuclease Inhibitor 292 405 IPR032675 -
Dere04g2008 920 SMART serkin_6 591 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2008 920 Gene3D Ribonuclease Inhibitor 184 291 IPR032675 -
Dere04g2008 920 MobiDBLite consensus disorder prediction 883 920 - -
Dere04g2008 920 SUPERFAMILY Protein kinase-like (PK-like) 567 860 IPR011009 -
Dere04g2008 920 SMART LRR_typ_2 197 221 IPR003591 -
Dere04g2008 920 SMART LRR_typ_2 316 339 IPR003591 -
Dere04g2008 920 SMART LRR_typ_2 125 149 IPR003591 -
Dere04g2008 920 SMART LRR_typ_2 269 294 IPR003591 -
Dere04g2008 920 FunFam Leucine-rich repeat protein kinase family protein 555 666 - -
Dere04g2008 920 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 667 876 - -
Dere04g2008 920 PANTHER RECEPTOR-LIKE PROTEIN 55 40 866 - -
Dere04g2008 920 Gene3D Phosphorylase Kinase; domain 1 560 666 - -
Dere04g2008 920 Gene3D Transferase(Phosphotransferase) domain 1 667 878 - -
Dere04g2008 920 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 30 191 - -
Dere04g2008 920 Pfam Protein kinase domain 595 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2008 920 ProSiteProfiles Leucine-rich repeat profile. 271 293 IPR001611 GO:0005515
Dere04g2008 920 ProSiteProfiles Protein kinase domain profile. 591 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2008 920 Pfam Leucine rich repeat 294 336 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2008 Dere-ChrDere04 22974573 22990075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2008 19 874 Receptor kinase-like Gene Family AT5G01950 58.212 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Dere04g2008 Pkinase 3.7e-47 CL0016