Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2003 ATGAGTTATAGCAAACAACTCTCCATGAAGTTCTATCTTACTTCATTGCTTCCATTCCTTTTTGGCGTTCATTTTCTTTTTCCTCTGGCTATTGCTGACTTGAATTCAGATAAGCAAGCCCTTCTTAGTTTTGCTGCTGCTGTACCCCATCGTCGAAACTTTAAGTGGAATCCAGCCACCTCTGTCTGTACATCTTGGGTTGGCATCACTTGCAATCCAAATGGCACTCATGTTGTTTCTGTCCGGCTCCCTGGAGTTGGACTAGTTGGCTCCATTCCAAGCAATACACTTGGAAAGCTTGCCAACCTCAAAACTATCAGCCTCCGTTCCAACCTACTCAGTGGAAATTTACCTACTGATATTACTTCTCTTCCTTCTCTCCAGTATCTCTACCTCCAGCATAATAACCTTTCTGGTGATATACCTGCTTCATTTTCTCCCCAAATAAATGCACTCGATCTGTCATATAATTCCTTCACTGGTGTCATTCCAACAACATTACAAAATTTAACAGAACTGACTAGATTGAACCTGCAGAACAACTCTCTTTCTGGACAAATACCTAATCTCAATGTCACTAAGCTCAAGTACTTGAATTTAAGTTACAACCAATTGAATGGCTCTATCCCAGCAGCTCTTCAGACATTTCCTAATTCATCCTTTGAAGGGAATTCTCTCTTGTGTGGACAACCTCTAAAACCGTGCTCTTCTGTCCCTCCTACACCTTCTCCTGCCTTAACTCCACCCCCGCCATTGGCTCCTGTAAGACAAACCTCCAAAAATAAATTGAGTAAGGTAGCTATCATAGCAATTGCTGTCGGAGGAGCTGTGCTGTTGTTATTTGTAGCTCTTGTCATTGTTCTTTGCTGTTTAAAGAAGAAAGATAATGGAAGGTCTAGTGGAATTAAAGGGAAGGGTCCTAGTGGTGGGAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTGCAGGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGGCTGTTCTTATAATTTTGATCTTGAGGATTTGCTAAGAGCTTCAGCTGAAGTTTTGGGAAAAGGTAGTTATGGTACTGCATATAAGGCTGTATTGGAAGAGTCAACTACTGTTGTGGTGAAAAGGTTGAAAGAAGTGGTGGTGGGCAAGAGGGACTTTGAGCAGCAGATGGAGACTGTGGGAAGGGTTGGGCAGCACCCAAATGTTGTGCCCCTTCGTGCTTATTATTATTCAAAGGATGAGAAGCTTTTGGTCTATGACTATGTCCCAGGTGGCAACCTATCGACACTGTTGCATGGTAGTAGGGCAGGGGGAAGAACTCCATTAGATTGGGACTCCCGATTGAAAATCTCCCTAGGAACTGCCAGGGGAATTGCCCACTTACATTCTGTTGGTGGGCCCAAATTTACTCACGGAAATATAAAGTCATCAAATGTCCTTCTCATCCAAGAAAATGAAGGCTGCATTTCCGATTTTGGCTTGACCCCGCTTATGAATGTTCCGGTAACCCCCACTAGAGCTGCAGGTTATCGCGCTCCTGAGGTGATAGAAATCCGTAAGCACACTCACAAGTCAGATGTGTACAGCTTTGGTGTCCTCCTCCTGGAAATGCTTACTGGGAAGGCACCTCTCCAGTCACCAGGCCGCGATGATATGGTTGATCTCCCTAGATGGGTCCACTCTGTTGTTAGGGAGGAATGGACAGCTGAAGTTTTTGATGTGGAGCTAATGAGTTATCAAAATATTGAAGAAGAAATGGTTCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTGCCGGATATGCGGCCTAGCATGGATGAAGTAGTGAGAATGATTGAAGAGATCCGGCAATCAGACTCAGAGAACCGGCCATCTTCTGAAGAGAATAAATCCAAGGACTCGAATGTTCAAACTCCATAA 1932 0.4415 MSYSKQLSMKFYLTSLLPFLFGVHFLFPLAIADLNSDKQALLSFAAAVPHRRNFKWNPATSVCTSWVGITCNPNGTHVVSVRLPGVGLVGSIPSNTLGKLANLKTISLRSNLLSGNLPTDITSLPSLQYLYLQHNNLSGDIPASFSPQINALDLSYNSFTGVIPTTLQNLTELTRLNLQNNSLSGQIPNLNVTKLKYLNLSYNQLNGSIPAALQTFPNSSFEGNSLLCGQPLKPCSSVPPTPSPALTPPPPLAPVRQTSKNKLSKVAIIAIAVGGAVLLLFVALVIVLCCLKKKDNGRSSGIKGKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMETVGRVGQHPNVVPLRAYYYSKDEKLLVYDYVPGGNLSTLLHGSRAGGRTPLDWDSRLKISLGTARGIAHLHSVGGPKFTHGNIKSSNVLLIQENEGCISDFGLTPLMNVPVTPTRAAGYRAPEVIEIRKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVHSVVREEWTAEVFDVELMSYQNIEEEMVQMLQIAMACVAKVPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2003 643 MobiDBLite consensus disorder prediction 618 643 - -
Dere04g2003 643 MobiDBLite consensus disorder prediction 298 323 - -
Dere04g2003 643 ProSiteProfiles Protein kinase domain profile. 348 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2003 643 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Dere04g2003 643 MobiDBLite consensus disorder prediction 618 634 - -
Dere04g2003 643 PANTHER OS05G0588300 PROTEIN 19 631 - -
Dere04g2003 643 CDD STKc_IRAK 354 619 - -
Dere04g2003 643 Pfam Protein kinase domain 351 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g2003 643 FunFam pollen receptor-like kinase 1 316 423 - -
Dere04g2003 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 424 631 - -
Dere04g2003 643 Pfam Leucine rich repeat 90 137 IPR001611 GO:0005515
Dere04g2003 643 Gene3D Ribonuclease Inhibitor 191 236 IPR032675 -
Dere04g2003 643 FunFam Leucine-rich repeat receptor-like protein kinase 147 235 - -
Dere04g2003 643 MobiDBLite consensus disorder prediction 309 323 - -
Dere04g2003 643 Gene3D Ribonuclease Inhibitor 34 190 IPR032675 -
Dere04g2003 643 SUPERFAMILY Protein kinase-like (PK-like) 352 626 IPR011009 -
Dere04g2003 643 Gene3D Phosphorylase Kinase; domain 1 317 423 - -
Dere04g2003 643 Gene3D Transferase(Phosphotransferase) domain 1 424 642 - -
Dere04g2003 643 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Dere04g2003 643 FunFam Leucine-rich repeat receptor-like protein kinase 36 146 - -
Dere04g2003 643 SUPERFAMILY L domain-like 47 235 - -
Dere04g2003 643 ProSitePatterns Protein kinases ATP-binding region signature. 354 385 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2003 Dere-ChrDere04 22908691 22911575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2003 8 641 Receptor kinase-like Gene Family AT5G58300 69.640 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere04g2003 Pkinase 1.1e-36 CL0016