Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2000 ATGTCCGTACAGTCTAGTCTGAATCTCCAACACCTCCCTCCTTCTGAGGGTGATTCAGAAATCTGCAGAACTAGAAGAAAACCCCATCAAAGGCTCCTCAGAATCATACTCACTGACCACGACGCCACTGATTCTGACTCTGACTCTTCCGACGATGAAGACCACCAAAACCCACAAAAATTGCGAAGAGCGAAGAGGCACATCACACAGATCAGCATCCACCTTCCCTCCTCAAGCTTCCCTTCCTCTTCTGCTTCTTCTTCTTCTCCCTCTTCGTCTTCACCTTCTCTTCGATCTTCTGCACAACCAAACCCGTCCCGATTCAAGAGACCCGCCCGCAACGCACCCTCTCGCCGCCACAACAAGTTCAGAGGCGTTCGGCAGAGGCCATGGGGCCGGTGGGCCGCGGAGATCCGGGACCCGACCCGCAGGAAACGGGTCTGGCTCGGGACGTTCGACACGGCGGAGGAAGCTGCCTCGGAGTACGACAAGGCTGCGCTGAAGCTCAAGGGTCCGAACGCCGTTACCAACTTCCCCAAATCCGTGACGACGGAGGAGGATAAGCCGACGCCGATCCCCGCCACCGCCGCGGACGAAAGCCCGAGCACGGAAGGAACAGCCTCGTACTCCGATTCTGCGGCGTCACCCACGTCCGTGTTGGCCTACGACGGCGATTCCACGGCGTTCGAAGGCTTCCGTTACGGCGACGTGGATGCGTTCGGGTTCGATATAGACGTGCCGTTGAGTCTGCCGGACGTGAACGTGGTCCTATCGAGTCAGCAGTTCGGGAACGAAGAGTTCGGCGAGTTCGACATCGACGATTTCCTGACGTGGCCATACTAA 843 0.5777 MSVQSSLNLQHLPPSEGDSEICRTRRKPHQRLLRIILTDHDATDSDSDSSDDEDHQNPQKLRRAKRHITQISIHLPSSSFPSSSASSSSPSSSSPSLRSSAQPNPSRFKRPARNAPSRRHNKFRGVRQRPWGRWAAEIRDPTRRKRVWLGTFDTAEEAASEYDKAALKLKGPNAVTNFPKSVTTEEDKPTPIPATAADESPSTEGTASYSDSAASPTSVLAYDGDSTAFEGFRYGDVDAFGFDIDVPLSLPDVNVVLSSQQFGNEEFGEFDIDDFLTWPY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2000 280 PIRSF PTI6 2 280 IPR017392 GO:0003700
Dere04g2000 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 221 - -
Dere04g2000 280 MobiDBLite consensus disorder prediction 178 214 - -
Dere04g2000 280 MobiDBLite consensus disorder prediction 75 107 - -
Dere04g2000 280 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Dere04g2000 280 SUPERFAMILY DNA-binding domain 122 181 IPR016177 GO:0003677
Dere04g2000 280 MobiDBLite consensus disorder prediction 75 127 - -
Dere04g2000 280 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Dere04g2000 280 MobiDBLite consensus disorder prediction 112 127 - -
Dere04g2000 280 MobiDBLite consensus disorder prediction 18 44 - -
Dere04g2000 280 MobiDBLite consensus disorder prediction 196 214 - -
Dere04g2000 280 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Dere04g2000 280 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Dere04g2000 280 MobiDBLite consensus disorder prediction 1 63 - -
Dere04g2000 280 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Dere04g2000 280 FunFam Ethylene-responsive transcription factor 2 121 180 - -
Dere04g2000 280 Gene3D AP2/ERF domain 121 181 IPR036955 GO:0003700|GO:0006355
Dere04g2000 280 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2000 Dere-ChrDere04 22886384 22887226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2000 31 222 AP2-EREBP Transcription Factor Family AT4G27950 44.444 1.43e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g2000 AP2 9.2e-16 CL0081