Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1999 ATGCAACGACACGGCGTTACGGCGAGAAAAGGCGGTACTGATGCCACCCACCTTCCTTCCTCTCAGCTCAAAGCATATACTCTCTCAGCAATCATGGCAGATGAAACACATCTTGTTGCAGCAGTTATGGCAGGTGAAACGCAAAATGATATGAAGGAGAGCAACGTAGAAAAGATGAAGAACATTGTGATGCAAGATCCTGATGATGGTTGCTTCAATGTGGAGCTCCAACCGCAAAATCATGCAACTAACCCTTTGGAGGTGTGTAAAAAAAGACAGAAAACCCAACAGAAGCTTGTCAGAATCATAGTCACTGACCCTGATGCTACTGATACCGACTCTTCCATCAGTGAAGATCAAGGAAAACCTGTAACATCACGGGGAGGGGAGAGGCAAACAACAAAAATCAGTATTGACATTTCCTTAGATTCTGCTTCATCTTATCTCTCGACTCCCTTTTCTAACAAGGAAGGCCTAACCCACTTTGAAAAATCAAAGAAATCAATCAACAGCAATGCCGCTATTGGTGGGCACAAGAAGTATAGGGGTGTTCGCCGGAGGAAATGGGGTCGGTGGGCTGCTGAGATCCGAGACCCGAGCAGTCGAAAACGGCTCTGGCTTGGAACATTTGACACTGCAGAGGAAGCTGCCTCAGAGTACGACAAGGCTGCTGTGAAGCTGAGGGGTCCTGATGCCATTACCAACTTTCCTCACTCTATGACGATGGAGATGCCTGCCACCACCTGTAACAGTCCGGGCACCGACAGTTTTGCCTCGGTTGGTGCACTGGCATCACCAACCTCTGTCCTGTCTTAA 816 0.4804 MQRHGVTARKGGTDATHLPSSQLKAYTLSAIMADETHLVAAVMAGETQNDMKESNVEKMKNIVMQDPDDGCFNVELQPQNHATNPLEVCKKRQKTQQKLVRIIVTDPDATDTDSSISEDQGKPVTSRGGERQTTKISIDISLDSASSYLSTPFSNKEGLTHFEKSKKSINSNAAIGGHKKYRGVRRRKWGRWAAEIRDPSSRKRLWLGTFDTAEEAASEYDKAAVKLRGPDAITNFPHSMTMEMPATTCNSPGTDSFASVGALASPTSVLS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1999 271 SMART rav1_2 180 243 IPR001471 GO:0003700|GO:0006355
Dere04g1999 271 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 96 270 - -
Dere04g1999 271 CDD AP2 179 239 IPR001471 GO:0003700|GO:0006355
Dere04g1999 271 ProSiteProfiles AP2/ERF domain profile. 180 237 IPR001471 GO:0003700|GO:0006355
Dere04g1999 271 FunFam Ethylene-responsive transcription factor 2 179 238 - -
Dere04g1999 271 Pfam AP2 domain 180 229 IPR001471 GO:0003700|GO:0006355
Dere04g1999 271 Gene3D AP2/ERF domain 179 239 IPR036955 GO:0003700|GO:0006355
Dere04g1999 271 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700|GO:0006355
Dere04g1999 271 PRINTS Ethylene responsive element binding protein signature 203 219 IPR001471 GO:0003700|GO:0006355
Dere04g1999 271 MobiDBLite consensus disorder prediction 108 133 - -
Dere04g1999 271 SUPERFAMILY DNA-binding domain 180 239 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1999 Dere-ChrDere04 22869928 22873445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1999 98 271 AP2-EREBP Transcription Factor Family AT4G27950 40.426 1.09e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g1999 AP2 1.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1999 04 22869928 22873445 Dere05g0016 05 250550 251374 CCT
Dere04g1999 04 22869928 22873445 Dere04g1999 04 22869928 22873445 ECH