Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1990 ATGTTTGCGGGTCGGCTACTGCTCATGAGTGGGAGAAGGGGTGGCCTATCCGATCCGGTAGATTCGCTCAATTCTGTAATAAGTGCGGTTCCACCACAAACAAGATGGTTGGAGGGGTTGCAGCTTTTGCAACAAGTATCCAAGTCTTTGTTCGACTACCTTGATTTTGGTGGTATAGGTTGCATTAGCTGTATAAAGGCTTCAAAATTTCGTTTGGACCTCATGCTTCTGCCACAGAATTCTTTTTCTAATAATGTTAAGCAGATTGGTGCTCACTTGTTGGTTCTTTTTGGTGATTCTGTGCCTTGCTACCCTGTTATTGCAGTTATTTTACCATCCACTTTATGTGGTATGCAGGGTACTAAAAAACCTAATGGGGCTGTCACATCAACCATAAAAGATGCAAGTGATCAACATTCTGCTCATATAGATGGTGGACTGCTTGTGGATAGTGTTGATGAAGGAAAACTAATGCAATTATGCAAAGTTGTTGAAGCTAGTGAACCTAGTCGTTGGCATCAACCTCAAAGAGATAAAGTATTTTCATCTAGTGGGTTTAACAGCCATGAAGTTAAGTGTCCATCCAGGGATGTGGATTTAGGATTTTCAAATATGATGACAACGTCTACTCAGTCGCTAAAATTTCCTATGTTAGAAAATAATAGACTAACATGGGAGATTAACAGTATGCATGAACCATTTGCACAACCATCTTTGAGTATGTCCCTAGGAATGCCATCAGGAAGCTCTGTCCTACCTTCTACTGCAGAGATTGTAGAAGAAAGGCTTGAGGGCAAACCATCTTCTTCCTTTCATCAAGGGCAAAGATCACGCCCTATTTTGCCTAAACCATTGAAGACTGGGCTAACTGCTAATGTAGAAACAAATAAGGGAATGAATTCTCAGGGACGTGTAGCACGGCCACCAGCTGAGGGAAGGGGAAAGAATCAGTTACTTCCTCGATACTGGCCTAGGATTACTGATGAAGAGCTGGAGCAGTTATCTGGAAATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGCGCCAGTGATGCAGGTCGAATTGGGCGCCTTGTTCTTCCAAAAGCATGTGCAGAAGCTTATTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGGAAATGCGAGATGTGACGGGGAATGAGTGGACGTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTACTGGAGGGTGTGACCTCTTGCATACAGTCAATGCAATTATGTGCGGGTGATACTGTAACATTTAGCAGGATAGATCCTGAGGGCAAACTTGTTATAGGTTTCAGAAAGGCATCAAATTCCGTGGAAACACAGGAGGCCTCTACATCTGCACATTTGAATGGGATTTCAACGAAGGAAGCAACCTCTGGTGCAACTGAGAACCTTCCCTCAGGAAGTAGTTATTCTGATCTTCTCCAGTCGATGGAAGTAAACAGGGAGCCTCATTTTAATGGACAATCTGAACATGTGCATTTGGGTGGCGGGGTTGCTGATTTGCCTAAAACTGAAAATTGTGGGGATTTGACAAGCAATGATTCACTGCATCAATTGATTTCAGTCTCAGAGAAGAAGAGGACTCGGAATATTGGGCCTAAAAGTAAGAGGTTGCTCATTCATTGTGAAGATGCTTTGGAGTTGAGACTTACATGGGAAGAAGCACAAGACTTACTTCGTCCGCCACCCAGTGTTCAGCCTAGCATTGTCACAATTGAGAACCATGTATTTGAAGAGTACAATGAACCCCCGGTTTTTGGGAAGAGAACTATATTCAGTGCCTATCCATCTGGGGGACAGGAACAGTGGGCACCTTGTGATGATTGCTCTAAATGGCGAAGGCTGCCTGTGGATGTTCTTCTACCTCCAAAGTGGACTTGTTCTGAAAATGTCTGGGATGCAAGCAGGTCTTCGTGTTTTGCACCAGAGGAGCTGAGTCCTAAGGAATTGGAAAATCTTCTGAAAACCAGCAAAGATTTCAAGAAGCGAAGAATCCTAGAAAACAACAAGTCACACCAAGAACTTGAACCTTCAGGCTTAGATGCTCTTGCTAGTGCGGCAGTTTTGGGAGATAATCTTGGAGACCCTTCTGAGTCATCAGCTGGAGCCACCACCAAACATCCTAGACACCGTCCTGGCTGCACCTGCATTGTCTGCATTCAGCCACCAAGTGGAAAGGGAAGACATCATCCCACATGTACTTGCAATGTGTGCATGACTGTGAAAAGGCGATTCAAAACCCTTATGTTGCGTAAGAAGAAACGCCAATCAGAGCGTGAAGCAGATGCTAGCCAGATGGATCATAGAGACGAGTCAGATGTGAATGGAGCACCTAAAGAAGACACAAGTCATGTGGAGAAAGAGGTAAGCATGAGTGGAAGACAGCCTGAGGTGGCTGAGTCCAGTGTCGGACAGATAGATCTGAATTGTCATCCTGATCGCGAAGACATGCTAGTTGATGTACCAGGACCGAGCATGAATGATCATCTTGAAGCTCCAAACTACGGATCACGGGAATATATGAATCAAAATGGCCTTACTGGAGAAGGTCAGAGATACTTCGCTAATGGTGGAAGCTTTGCATCAGTTGTCTGGGAGAAGGAAAGAAGAGACGGTGAGATATATTATGATCCCAATTCAAGTATGAATGGTTTTGATAAAGGTCTACGTGGAATCTGCCAGATCTTTTTCGATGCAATATCTCATGGGAAGTCCAAAGGAGTGTCAAATGCTTTGAAGCTTAAGTTAGTGACTACAATGGAAGTGTACAAATATACAAGAATCTCATTCCCTCCCCATGCTTCGGTTCTTCCTTGCTTCTTCTCCGTTATTTTTCTTCGTTCCTCTCACTTTCAGAGCTTGTCACTGAGGTTTAGAAGCTTTGAAGATTAG 2931 0.4371 MFAGRLLLMSGRRGGLSDPVDSLNSVISAVPPQTRWLEGLQLLQQVSKSLFDYLDFGGIGCISCIKASKFRLDLMLLPQNSFSNNVKQIGAHLLVLFGDSVPCYPVIAVILPSTLCGMQGTKKPNGAVTSTIKDASDQHSAHIDGGLLVDSVDEGKLMQLCKVVEASEPSRWHQPQRDKVFSSSGFNSHEVKCPSRDVDLGFSNMMTTSTQSLKFPMLENNRLTWEINSMHEPFAQPSLSMSLGMPSGSSVLPSTAEIVEERLEGKPSSSFHQGQRSRPILPKPLKTGLTANVETNKGMNSQGRVARPPAEGRGKNQLLPRYWPRITDEELEQLSGNLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLEMRDVTGNEWTFQFRFWPNNNSRMYVLEGVTSCIQSMQLCAGDTVTFSRIDPEGKLVIGFRKASNSVETQEASTSAHLNGISTKEATSGATENLPSGSSYSDLLQSMEVNREPHFNGQSEHVHLGGGVADLPKTENCGDLTSNDSLHQLISVSEKKRTRNIGPKSKRLLIHCEDALELRLTWEEAQDLLRPPPSVQPSIVTIENHVFEEYNEPPVFGKRTIFSAYPSGGQEQWAPCDDCSKWRRLPVDVLLPPKWTCSENVWDASRSSCFAPEELSPKELENLLKTSKDFKKRRILENNKSHQELEPSGLDALASAAVLGDNLGDPSESSAGATTKHPRHRPGCTCIVCIQPPSGKGRHHPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADASQMDHRDESDVNGAPKEDTSHVEKEVSMSGRQPEVAESSVGQIDLNCHPDREDMLVDVPGPSMNDHLEAPNYGSREYMNQNGLTGEGQRYFANGGSFASVVWEKERRDGEIYYDPNSSMNGFDKGLRGICQIFFDAISHGKSKGVSNALKLKLVTTMEVYKYTRISFPPHASVLPCFFSVIFLRSSHFQSLSLRFRSFED 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1990 976 Pfam CW-type Zinc Finger 615 657 IPR011124 GO:0008270
Dere04g1990 976 Gene3D - 607 659 - -
Dere04g1990 976 ProSiteProfiles Zinc finger CW-type profile. 610 660 IPR011124 GO:0008270
Dere04g1990 976 MobiDBLite consensus disorder prediction 266 285 - -
Dere04g1990 976 MobiDBLite consensus disorder prediction 762 815 - -
Dere04g1990 976 SMART B3_2 346 447 IPR003340 GO:0003677
Dere04g1990 976 SUPERFAMILY DNA-binding pseudobarrel domain 344 446 IPR015300 -
Dere04g1990 976 ProSiteProfiles B3 DNA-binding domain profile. 346 447 IPR003340 GO:0003677
Dere04g1990 976 MobiDBLite consensus disorder prediction 766 806 - -
Dere04g1990 976 Pfam B3 DNA binding domain 346 446 IPR003340 GO:0003677
Dere04g1990 976 CDD B3_DNA 344 445 IPR003340 GO:0003677
Dere04g1990 976 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 46 864 - -
Dere04g1990 976 MobiDBLite consensus disorder prediction 704 723 - -
Dere04g1990 976 FunFam B3 domain-containing transcription repressor VAL1 324 451 - -
Dere04g1990 976 Gene3D - 324 451 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1990 Dere-ChrDere04 22743234 22752571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1990 230 830 B3 DNA Binding Superfamily AT2G30470 55.049 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere04g1990 B3 2.8e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1990 04 22743234 22752571 Dere05g0024 05 327625 334604 CCT
Dere04g1990 04 22743234 22752571 Dere04g1990 04 22743234 22752571 ECH