Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1982 ATGGATGGAATAAGATATTACAGTAATGTAATCCTATCAAAGATACCTGATATTGAGAAGTGCTTAGTTGTTGCTAAATTGAAAGCTAAGAAAGGGTACTGGTGGGGTTCGTTTCAATTTGTTCACCCCTTAACAGCCTTGTCTGTTCCTCCACGCGAGGTTTCTGGCTGCCACCCTTTGCTTCTGAACTCCATCGTCTTCATTTCTTCTTCCACTGGTTGTCTTGGACTTTTGGAGCCCCACAAGGGCTGCTGGCAACCGTCGTTGGCAACTCTATACCGTCTCTTTGCACTCGCCACAGTAGAATTTCGAACTCTGCAGAATATTTTCCACACTACTTGGATGGAGGTTGTTTTGGCAGCATCTTCTGTTGATGCTGGTATAGGCTGCTGGCACCTTCAGTCTGGGGCTGAGCAGCTGCGCTACAAATCTTGTGCTTGCCCGCCTCATGGCCTCATCAGTGTAGGCGCTCACTTCCTTGCATCTTCCCAGCTTCGAGACTCATCAGCCTCCTCTGGTTTTGTTTTCTACTGGTCCTGGTCCAAGCCTCAAGTAGAAGCCAAGAGCTTTCCAGCTGAGCCCATCAAGCCTCTAGCTGCTAATCACTCAGGCACTTATATAGCTGGTGGGGGCTTGTCAGGTGACATATACTTGTGGGAGGTTGAAACTGGCAGATTGCTTAAGAAGTGGCATGCTCATTATAGGGCTGTAACTTGCCTAGTATTTTCTGAAGATGACTCACTACTGATATCTTGTTCAGAAGATGGGTGCATAAGAGTTTGGTCCCTGTTCATGATATTTGATGATTTAGGAAGACAGGAAATGGGTCATCTTTACGAGCATAGCTTTTCAGAGCACACCTTACCAGTAACGGACCTTGTAATTGGTTATGGAGGATGCAATGCAATTATAATTTCAGCTTCAGAGGATCGAACCTGTAAGGTGTGGAGCTTATCTAGAGGAACACTACTAAGAAATATAGTATTTCCTACTATAATTGATGCAATTGCATTGGATCCTGCTGAACATGTCTTTTATGCTGGCAGTAGAGACGGAAAAATATTTATTGCCGCTCTTAACACTGAAAGGATCTATAGTGATAACTATGGGATGCATATCATTGGTTCATTCTCTAATCACAGCAAGGCAGTTACTTGCTTAGCATATGGTGCGAGTGAGAATTTATTAATCTCTGGATCTGAGGATGGAATGGTTCGAGTTTGGAATGCAAAAACTCATAATATTGTCCGAATGTTTAAACATGCAAAAGGACCCGTAAATAATATTCTTGTTGTTAGACAACAACTTGACTCAACTAATCGTATATCTTCTAATTTAAAAGCGTCGAGAAGGCAGGGATCTTTATTGCCCCCTCCATTGGAAAAATACTCAAATTCAACGGATGACGACTCGGATGTTAAGACAATTATTAGCCCCCAGGATGGCGGGAGATGTATGGATGCTTCATACATCTCTTCTCAGGTTATATATAACCAAATAAAAGAATTTCAGCATCGGGGTTCTGCTGCTGCTGCCGAAATGGAGATGGAGAGACTGAAAGCCGATTGCAGAAGGTCTCTGCAAGTGGTTAACCAGTGGAAGAAGATGTATGAAAATTGTGTTAACGATCTCTTGGACGGTAGTCAAGCAAAAACCTCAAATCAAACTGGCGACTAA 1677 0.4311 MDGIRYYSNVILSKIPDIEKCLVVAKLKAKKGYWWGSFQFVHPLTALSVPPREVSGCHPLLLNSIVFISSSTGCLGLLEPHKGCWQPSLATLYRLFALATVEFRTLQNIFHTTWMEVVLAASSVDAGIGCWHLQSGAEQLRYKSCACPPHGLISVGAHFLASSQLRDSSASSGFVFYWSWSKPQVEAKSFPAEPIKPLAANHSGTYIAGGGLSGDIYLWEVETGRLLKKWHAHYRAVTCLVFSEDDSLLISCSEDGCIRVWSLFMIFDDLGRQEMGHLYEHSFSEHTLPVTDLVIGYGGCNAIIISASEDRTCKVWSLSRGTLLRNIVFPTIIDAIALDPAEHVFYAGSRDGKIFIAALNTERIYSDNYGMHIIGSFSNHSKAVTCLAYGASENLLISGSEDGMVRVWNAKTHNIVRMFKHAKGPVNNILVVRQQLDSTNRISSNLKASRRQGSLLPPPLEKYSNSTDDDSDVKTIISPQDGGRCMDASYISSQVIYNQIKEFQHRGSAAAAEMEMERLKADCRRSLQVVNQWKKMYENCVNDLLDGSQAKTSNQTGD 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1982 558 Gene3D - 100 330 IPR015943 GO:0005515
Dere04g1982 558 Pfam WD domain, G-beta repeat 374 409 IPR001680 GO:0005515
Dere04g1982 558 Pfam WD domain, G-beta repeat 281 317 IPR001680 GO:0005515
Dere04g1982 558 Pfam WD domain, G-beta repeat 225 262 IPR001680 GO:0005515
Dere04g1982 558 FunFam Protein ROOT INITIATION DEFECTIVE 3 112 356 - -
Dere04g1982 558 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 326 IPR001680 GO:0005515
Dere04g1982 558 SMART WD40_4 183 220 IPR001680 GO:0005515
Dere04g1982 558 SMART WD40_4 223 262 IPR001680 GO:0005515
Dere04g1982 558 SMART WD40_4 320 358 IPR001680 GO:0005515
Dere04g1982 558 SMART WD40_4 370 409 IPR001680 GO:0005515
Dere04g1982 558 SMART WD40_4 276 317 IPR001680 GO:0005515
Dere04g1982 558 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 412 - -
Dere04g1982 558 MobiDBLite consensus disorder prediction 450 470 - -
Dere04g1982 558 Gene3D - 331 449 IPR015943 GO:0005515
Dere04g1982 558 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 263 - -
Dere04g1982 558 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 263 IPR001680 GO:0005515
Dere04g1982 558 SUPERFAMILY WD40 repeat-like 169 430 IPR036322 GO:0005515
Dere04g1982 558 ProSitePatterns Trp-Asp (WD) repeats signature. 396 410 IPR019775 -
Dere04g1982 558 PRINTS G protein beta WD-40 repeat signature 304 318 IPR020472 -
Dere04g1982 558 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Dere04g1982 558 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Dere04g1982 558 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 418 IPR001680 GO:0005515
Dere04g1982 558 PANTHER WD-REPEAT PROTEIN 18 116 545 IPR045227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1982 Dere-ChrDere04 22635638 22642825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1982 232 417 Eukaryotic Initiation Factors Gene Family AT2G46290 22.632 1.92e-06 48.1