Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1978 ATGCAAGATCCACCTTCGAACCCTAACCCCAATCCCTCTTCTCGCAATGCCAATGCCAATGCCGCTTCCCAATTCCCGCCACCACCGCCCGCAGTTTCCGCATCTCCGGCGACGGCGGCGCCCGCCGCTTCCTCATCGTCATCTTCGTTGTTCGTGCGGGGAGGGGGTGCTGGTTCCGGCGTCGGTGGATCCCACTCGCTCCATCACCACCACCACCACAGGAGGGCCCACTCCGAGGTCAGCTTCCGGTTGCCCGATGACATGATGGATCTGTCGCCGTCCGATCCGTTTAATGGCGGCTCATCCACGGCCAGCCTTGAAGAGATCGGATCCGAGGACGACCTCTTCTCCACTTACATTGATGTTGACAAGCTCGGAGGGGCTAACGGATCGGGAAGTGGTGGAAATGGATCAGATCAGAATGGGAATGGGAATGGTGGTGGTACAAGCAATCACAATGAGAGAGAGAAGAGCCCGAGTGCGTGGCCAAGACATAGGCATAGTAGCTCCGTGGATGGGTCGACTTCTACAAGCATGTTTGGGGAGATTATGGAGGCAAAGAAAGCTATGCCTCCTGATAAGTTAGCCGAGCTGTGGAATATTGATCCCAAGCGTGCCAAGAGAATACTGGCAAATCGACAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGTTATATCCAAGAACTTGAGCGAAAAGTTCAGACCCTTCAGACTGAAGCTACAACTCTTTCTGCCCAACTTACACTATACCAGAGGGACACGACAGGTCTGAGCACTGAAAATACAGAGCTTAAACTTCGTCTGCAAGCCATGGAGCAACAGGCACAGCTTCGAGATGCTCTCAATGAAGCATTGAAGAAGGAAGTTGAGAGACTTAAGATTGCAACTGGGGAGATGATGAGCCCCTCTGAATCTTTTAATCTAGGAATGCACCAGATGCAGTTTACGGCTTCAAACTTCTTTCCACTTCCACCTCAGTCTGGTCCTTCTGGTCACCAGAACATGCAGCTGCCATCATTTAATCACTCCTCCTCTGGTATTCCAACTCATCAACTGCAACAAACAAACTCTCATCCATTCTCAGAAATGATGCAGAATGACCAACTCGGTCGTTTGCAAGGGCTTGACATTAGTAGCAAAGGATCACTCCTCGTGAAGTCTGAAGGCCCCTCGCTTTCCGCAAGTGAGAGTAGCACAACATTTTAA 1209 0.5136 MQDPPSNPNPNPSSRNANANAASQFPPPPPAVSASPATAAPAASSSSSSLFVRGGGAGSGVGGSHSLHHHHHHRRAHSEVSFRLPDDMMDLSPSDPFNGGSSTASLEEIGSEDDLFSTYIDVDKLGGANGSGSGGNGSDQNGNGNGGGTSNHNEREKSPSAWPRHRHSSSVDGSTSTSMFGEIMEAKKAMPPDKLAELWNIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHQMQFTASNFFPLPPQSGPSGHQNMQLPSFNHSSSGIPTHQLQQTNSHPFSEMMQNDQLGRLQGLDISSKGSLLVKSEGPSLSASESSTTF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1978 402 Coils Coil 268 299 - -
Dere04g1978 402 Pfam bZIP transcription factor 204 259 IPR004827 GO:0003700|GO:0006355
Dere04g1978 402 MobiDBLite consensus disorder prediction 323 354 - -
Dere04g1978 402 CDD bZIP_plant_RF2 205 254 IPR044759 GO:0003700|GO:0006355
Dere04g1978 402 FunFam probable transcription factor PosF21 203 256 - -
Dere04g1978 402 MobiDBLite consensus disorder prediction 131 156 - -
Dere04g1978 402 MobiDBLite consensus disorder prediction 1 105 - -
Dere04g1978 402 SMART brlzneu 200 264 IPR004827 GO:0003700|GO:0006355
Dere04g1978 402 SUPERFAMILY Leucine zipper domain 204 255 IPR046347 GO:0003700|GO:0006355
Dere04g1978 402 Gene3D - 203 255 - -
Dere04g1978 402 MobiDBLite consensus disorder prediction 127 177 - -
Dere04g1978 402 MobiDBLite consensus disorder prediction 38 53 - -
Dere04g1978 402 Coils Coil 220 247 - -
Dere04g1978 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 202 265 IPR004827 GO:0003700|GO:0006355
Dere04g1978 402 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 24 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1978 Dere-ChrDere04 22566491 22569126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1978 1 402 bZIP Transcription Factor Family AT2G40620 50.455 9.56e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dere04g1978 bZIP_1 6.6e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1978 04 22566491 22569126 Dere04g1978 04 22566491 22569126 ECH