Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1974 ATGGCACTTGCTCTCCCAGAAGTTGGAACGGCACCACACACATTTTCTTCTGCACTGATGTTTCTCATTGCCCTCTTCATCAGCATTCTCCTGATGGGTTCCGCCGCCGCCGGTTATGGCGGTTGGCAGACTGCTCACGCCACTTTCTACGGCGGCGGGGATGCCTCCGGCACAATGGGAGGAGCATGTGGGTATGGGAATTTGTACAGTCAGGGGTATGGAACCAATACAGCAGCTCTAAGCACAGCTCTGTTCAACAATGGGTTAAGCTGTGGGGCATGCTATGAGATGAGATGCACCAGTGACCAAAGATGGTGCAAACATGGGGCCATTATTGTTACAGCCACAAATTTTTGCCCTCCAAACTCGGCTTTGCCGAACAACAATGGTGGTTGGTGCAACCCTCCTCTTCAGCACTTCGATTTGGCTGAACCTGCCTTCCTCCAGATTGCTCAGTATAGAGCTGGGATTGTACCTGTGGCCTTCAGAAGAGTGCCCTGCATGAAAAAGGGAGGAATAAGGTTCACCATCAATGGCCACTCTTACTTCAACTTGGTTTTGATCACCAACGTGGGAGGTGCAGGGGATGTCCATGCAGTCTCCATCAAAGGCTCCAGATCTGGCTGGCAACCCATGTCAAGAAACTGGGGCCAGAACTGGCAGAGCAACTCCTACCTCAATGGCCAATCCCTCTCTTTCCAAGTCACCACCAGTGATGGCAGAACCCTCACAAGCTACAACGTGGCACCGCCGAATTGGCAGTTCGGTCAGACCTTCCAAGGTGGTCAGTTTTAA 795 0.5208 MALALPEVGTAPHTFSSALMFLIALFISILLMGSAAAGYGGWQTAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCTSDQRWCKHGAIIVTATNFCPPNSALPNNNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRSGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTLTSYNVAPPNWQFGQTFQGGQF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1974 264 PRINTS Expansin signature 130 147 IPR002963 GO:0009664
Dere04g1974 264 PRINTS Expansin signature 72 86 IPR002963 GO:0009664
Dere04g1974 264 PRINTS Expansin signature 99 110 IPR002963 GO:0009664
Dere04g1974 264 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Dere04g1974 264 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Dere04g1974 264 PRINTS Expansin signature 147 160 IPR002963 GO:0009664
Dere04g1974 264 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Dere04g1974 264 PRINTS Expansin signature 171 183 IPR002963 GO:0009664
Dere04g1974 264 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Dere04g1974 264 CDD DPBB_EXPA_N 41 167 - -
Dere04g1974 264 SUPERFAMILY PHL pollen allergen 169 261 IPR036749 -
Dere04g1974 264 SUPERFAMILY Barwin-like endoglucanases 41 190 IPR036908 -
Dere04g1974 264 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Dere04g1974 264 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Dere04g1974 264 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Dere04g1974 264 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Dere04g1974 264 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Dere04g1974 264 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Dere04g1974 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 172 IPR007112 -
Dere04g1974 264 FunFam Expansin 32 168 - -
Dere04g1974 264 Gene3D - 172 264 IPR036749 -
Dere04g1974 264 SMART dpbb_1 77 162 IPR007112 -
Dere04g1974 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 261 IPR007117 -
Dere04g1974 264 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Dere04g1974 264 Gene3D - 31 168 IPR036908 -
Dere04g1974 264 Pfam Lytic transglycolase 77 161 IPR009009 -
Dere04g1974 264 FunFam Expansin 172 264 - -
Dere04g1974 264 PANTHER EXPANSIN-A15 19 264 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1974 Dere-ChrDere04 22522761 22525123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1974 17 264 Expansin Gene Family AT2G40610 80.321 2.78e-148 413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1974 04 22522761 22525123 Dere05g0026 05 355136 356087 CCT
Dere04g1974 04 22522761 22525123 Dere04g1974 04 22522761 22525123 ECH
Dere04g1974 04 22522761 22525123 Dere05g0026 05 355136 356087 ECH