Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1961 ATGATGAGTTGGGTTACTGCTGGGAGAGTTAAAGCGTGCCGAGGACGGTTGAAACACCTTTCTGTATATAGTTATACTCTTATAAATATTCATCTAACTGTTTCATCTGGTATGGAGAACAAATCAATTGTCTTGATGGAAAGATATGAGTTAGGAAGATTGCTAGGCCAAGGCACCTTTGCCAAGGTGTACTATGCACGAAGCACAGTAACTAATCAGAGTGTGGCTATTAAAGTAATTGACAAAGATAAGGTTCTAAAAACTGGGCAAGCTGATCGCGTCAAGCGTGAAATATCTGTTATGAGAAAGGTTAGACATCCCAATGTCATACAGCTGTTTGAGGTTATGGCCACCAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAACTCTTCAACAAGGTGGCTAAAAAGGGGAAGCTCAAAGAAGATGTCGCACATAAATATTTCTGGCAGCTAGTCAATTCAGTTGATTTTTGTCACAGCAGAGGTGTATACCACCGAGATATAAAGCCAGAGAACATTTTGTTGGATGAAAATGGGAATTTGAAGGTCTCTGATTTCGGGTTAAGTGCTCTGGCTGAATCCAAGTGGCAAGATGGCTTGCTGCACACGCCTTGCGGCACACCAGCTTATGTTGCTCCTGAAGTCATCAAAAGGAAAGGGTATGATGGTGCCAAAGCTGATATTTGGTCTTGTGGGGTAGTCTTATTTGTCTTATTGGCAGGTTATCTCCCTTTTCATGATTCAAATTTGATAGAGATGTATAGGAAGATTGGCAAAGCAGAATTTGAATGTCCTAGTTGGTTCTCACCAGAAGTTCGCAAACTATTATGCAAGATGTTAGATCCAGATCCTGATGCTAGGATTTCGATAGAAAAGATTAGGGAGTGTAATTGGTTCAAAAAAGGGCCAAATGTTAGACATAAAAAACCTATAGTGCAAAAGAATACTGTCTCTTCATCAGGTACAAATCCTTCTGATCAAAACGATGGAAGTGATAGCACAGCAGCAGAAGCAAAGCAAGAGTCAGTTGTGCCCACCAGTATAAATGCTTTTGATATCATCTCCCTTTCTGCTGGTTTTGATCTTTCTGGATTCTTTGAAGACAGTTTTAAGAAGAGGGAAGCAAGATTTACTTCAAGACAACCTGCGCCAGTAATCATCTCAAAGCTGGAAGAAACTGCTAAGCGTCTGAAGATGAAAATAAAGAAGAAAGCCGCAGGTTTGTTAAAATTAGAGGGCCTCAAGGAAGGTAGGAAGGGTATTTTATCCGTTGATGCAGAGATCTTTGAAGTTACTCCGTATTTCCATTTGGTGGAAGTGAAAAGATCAGATGGAGATACATTGGAATTTCAGAAAATACTGAAAGAAGATATTAGGCCTGCTCTTCAGGATATTGTTTGGGTTTGGCAAGGTGATGAGCAACAAAAGCAATCAGAGCAACAACTGCAGATACATGACCAGCAGCCACAACTGCAGATACATGACCAGCAGCCACAACAACCACAAGCTATAATACATTCTTAG 1539 0.4035 MMSWVTAGRVKACRGRLKHLSVYSYTLINIHLTVSSGMENKSIVLMERYELGRLLGQGTFAKVYYARSTVTNQSVAIKVIDKDKVLKTGQADRVKREISVMRKVRHPNVIQLFEVMATKSKIYFVMEYAKGGELFNKVAKKGKLKEDVAHKYFWQLVNSVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALAESKWQDGLLHTPCGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYLPFHDSNLIEMYRKIGKAEFECPSWFSPEVRKLLCKMLDPDPDARISIEKIRECNWFKKGPNVRHKKPIVQKNTVSSSGTNPSDQNDGSDSTAAEAKQESVVPTSINAFDIISLSAGFDLSGFFEDSFKKREARFTSRQPAPVIISKLEETAKRLKMKIKKKAAGLLKLEGLKEGRKGILSVDAEIFEVTPYFHLVEVKRSDGDTLEFQKILKEDIRPALQDIVWVWQGDEQQKQSEQQLQIHDQQPQLQIHDQQPQQPQAIIHS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1961 512 Gene3D Phosphorylase Kinase; domain 1 40 128 - -
Dere04g1961 512 CDD STKc_SnRK3 48 303 - -
Dere04g1961 512 ProSiteProfiles NAF domain profile. 348 372 IPR018451 GO:0007165
Dere04g1961 512 Pfam NAF domain 350 408 IPR004041 GO:0007165
Dere04g1961 512 ProSiteProfiles Protein kinase domain profile. 49 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1961 512 Gene3D Kinase associated domain 1, KA1 348 473 - -
Dere04g1961 512 FunFam Non-specific serine/threonine protein kinase 348 472 - -
Dere04g1961 512 CDD CIPK_C 354 468 - -
Dere04g1961 512 FunFam Non-specific serine/threonine protein kinase 40 128 - -
Dere04g1961 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Dere04g1961 512 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 39 467 - -
Dere04g1961 512 MobiDBLite consensus disorder prediction 315 346 - -
Dere04g1961 512 SUPERFAMILY Protein kinase-like (PK-like) 45 337 IPR011009 -
Dere04g1961 512 SMART serkin_6 49 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1961 512 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Dere04g1961 512 Pfam Protein kinase domain 49 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1961 512 MobiDBLite consensus disorder prediction 316 346 - -
Dere04g1961 512 Gene3D Transferase(Phosphotransferase) domain 1 129 309 - -
Dere04g1961 512 FunFam Non-specific serine/threonine protein kinase 39 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1961 Dere-ChrDere04 22431553 22433717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1961 38 483 CBL-interacting serine-threonine protein kinases AT5G58380 68.996 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere04g1961 Pkinase 5.4e-77 CL0016