Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1958 ATGAACATAGGGCTATTCTTTTAAATACTCCCTCACCTGTTTGTGTTTGTGCCTCAAAGAAAGCCCTCCCTCCTCACAACCTCACCACTCAGATCAAGACAATCAGGAGGCATGCTTGGATGTCCAGAAACAGAAAGAGCAGAAGAGATAAAAAAGAATACAGCAGAGGCAGCAGAAGCATCTTGTCAAATGGGAAGGAGGCATCTCTATGGACCAGCAGCTTCAGGAACTACCTTAAACACTGTCACTCCTTGTGCTGCATGTAAACTTCTGAGAAGAAGATGTGCTGAAGAATGCCCTTTCTCTCCTTACTTTTCACCTCATGAGCCTCAAAAGTTCGCAGCTGTTCATAAAGTGTTTGGGGCAAGCAATGTCTCCAAGATGCTAATGGAGGTGCCTGAGAGCCAAAGAGCAGATGCTGCAAATAGTCTGGTTTATGAAGCTAACTTAAGGTTGAGGGACCCAGTTTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAGTCATTACAAGCAGAGCTAAATGCAGTAAGAGCTGAGATTCTAAAGTACAAGTACAGAGAAGCTGCTAGTCAGATCATTTCTTCTCACGGGGCTTTGGTTTCTTCAGTGGAGGAACCCATTTCTGCAGAGTCACAACAAGGACTTCCTCAACCTCAACCTCAACCTCCTCCAAAGCCATCATTACCTTCTCCTTCCGTTGTTCTATCATCCTTGTCTTCATCTTCCAGTTCTTCTGTATACACACCCCCTAAGAGCACAATCAGCCATGGATCTATTTCGAGTGAAAATGTCCCTTACTTTGTTTAA 819 0.4432 MNIGLFFXILPHLFVFVPQRKPSLLTTSPLRSRQSGGMLGCPETERAEEIKKNTAEAAEASCQMGRRHLYGPAASGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKYREAASQIISSHGALVSSVEEPISAESQQGLPQPQPQPPPKPSLPSPSVVLSSLSSSSSSSVYTPPKSTISHGSISSENVPYFV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1958 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 80 226 - -
Dere04g1958 272 Coils Coil 163 190 - -
Dere04g1958 272 MobiDBLite consensus disorder prediction 220 234 - -
Dere04g1958 272 Pfam Lateral organ boundaries (LOB) domain 84 181 IPR004883 -
Dere04g1958 272 MobiDBLite consensus disorder prediction 209 272 - -
Dere04g1958 272 MobiDBLite consensus disorder prediction 235 266 - -
Dere04g1958 272 ProSiteProfiles LOB domain profile. 83 184 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1958 Dere-ChrDere04 22386083 22388464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1958 45 194 AS2 family AT2G30340 75.000 8.01e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere04g1958 LOB 6.8e-41 No_clan