Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1955 ATGTTGGGGATATGCCATATGAGGCGGATATGGGACCGAGTTGGGCTGCGGCGCGCGCAAGTGGACCCGTGTTCTACACCTCCGCCATCGTTGCCGAGTGTTCCAGCAGTCATACCAAATGCGTCCGAGAAAAAGCGCCCCGCAGAAATCGCACCCAACGCCCCAATCAAAAAGCGATGCGTTTCATGTATGGCTAAGATGCTTCTCAATTCCATCGAAGAGGTTTACCAGAGTTTTCTGGAAGAGTCTCGACTGGCGCAGAATTCTCCGGCTGCATTGGCGGCGGAGAGAGAACGACAAATGCGTGTTTTGATGTCCCTACGGGTCCGATATAGGTGTACAGTCGAAAGGTGGAATATCTATGTATCCTTGGTATTGAGTGCTTTAAGAGATTTTCATGAAGATTGCATTGCATTGGTGCTTGCCCTAACCGAGCACCCTATTCCTCTGGTGGATGCGATCACCAGCGGTGGCGCTCAGAAAACCATCTTGTTGCCGTCTACGTTTCGACTACCTTCTTTAATTACCGAAGCAAGGACAAGGGGCTGAATGGGCAAATATGGTACTGGGTTTGAGATGACATTGCTTGTTGCGTTTGCAATTCTGGTTGCTATTGCGCGTGAAAAAGATAGGAATATGTTACAGCCTCTCTATAGAGCAATTGAAAAGGCCAACCTGTGTCATTGGAAAGCCCTTATGCAGGCTGGATTATTGTTCAAGTTTTCTGTTACTGATGCAGGTGTTATGGAGATATCCTTGTTAAAGGTGCTGGTTAATGGAATATCCTCATTTTTGAATCTATCATCTTCTGGGAATAAAAACTCGGAACCTGTTTCAAAGTATTATGAAAAGGCAGAGGAGACACTTAAGTTGCTGAAGCCAATAGTTGATGCATTGGTTAATTTTGAATTAGCTTCTGATGAAGTGCTCAATAAGGCATTTGAAGAAGTGGGTCAGGCTGTTGATGAGTTGAGGGAGCTTTTTGGGAACTGGCATCCATTGTCTAGCAAAGTTTACTTTGTTAAGCAAGTTGAATCCTTAATATCTAGGATCCAGACTTCAGGACTCAAAATATTTCAGCAGCTGAAGACTTCTCATCTAAGTCTCCCTGATGAACTGAATACTGTACATGTTGAGCATTGCGTTCAGAAACTTAAGCTTTTGGGACATGAGGAAGAAACATTGTCAGTCATTAAAGAAGCTATTAGTGAACAAGAAAAAGGTGTAGGACCTAGTTCAGAGGTCCTGGCAAACATTGCTGAGAGCCTGGGCCTGAGGTCAAACCAAGAGATTCTGATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAGCTGAAAATATTGCAGAAGCTAAATATATTGATCAAATTATTACACTTGTAACCCGTATGCATGACCGTCTTGTTGAGCTTAAGCAAGCCGAGAGTAGTAGCCCAGTTCCTGTACCTCCTGATTTTTGTTGTCCTCTTTCTTTGGATTTGATGACAGATCCAGTGATTGTGGCCTCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATTGATCTGGGCCTTACTGTCTGTCCAAAGACACGTCAGACACTGGCTCACACAAACCTAATACCTAACTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCAGTTGATCCCATAAAGTCCACAAACTTTAATCAAGTATCTTTTCTTCATGGGTACATGGAGTCTGGTGCTGTTTTTGCTCATTCTCGGGCCAACCAGCCATCCTCCCCTGAGGCAGCTCGCTCTCGTTCTTTTAGTTCACCAGGTAAGAGCTTACCTTCTTCTGGAGGAATCCACAAAGAGGGCACTTCACCATTTCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGCATGGCTAATGGGCAGTGCTTGGATGTTGCAAGAATATCAATGACAGGTTCTGATGGCAGGTCTGCTAGCTCTGATGAAAGGAGTGAGGATTCAGTTGTCCAACCACCAGTATCTCAACCTATAACTGAATCTTCCAATGCCTTTAGCTCTGAACAATCTCAAACCCATGTTGGAATGGCTTCTGAATCTGGTGCTGTGTCTGGTGTTCAAGGAAAACAAGGTGATGGTAACATTGTTTCTCAGCTGTCAACCACTCCAGGAAACAGTAGGGATGCTTCTGTGGTGGTGGATTCAGGGCCAGATGCTACTGGTGCTGCCGCCATCAGTGCTCCCCAGAGAGAACCTGAATTCTCACCTCGGTTGGTGGAGACAAGGTCTCGAAACCAAAGTATATGGCGGCGGCCATCAGATAGATTTCTTCCTAGGGTGGTGCCCTCTGGTGGTGAAACAAGAGCTGATCTTTCTGGTATTGAAACCCAGGTTCGTAGTTTGGTTGAGGACTTGAAGAGTTCTTCTCTCGATACTCAAAGAGAGGCAACAGCAAAGCTCCGCCTTCTTGCTAAGCACAACATGGACAATCGACTTGTGATTGCCAACTGTGGAGCCATTAGCTTGTTAGTTGACTTACTTCAATCTACCGATACAGTGATCCAGGAAAATGCTGTTACAGCACTGCTCAACTTATCAATCAATGATAATAACAAAACTGCAATTGCAAACGCTGGTGCAATTGATCCTTTGATCCATGTCCTTGAGACAGGGAGCCCTGAAGCCAAGGAGAATTCAGCTGCCACTCTCTTCAGCTTATCAGTGATTGAAGAAAACAAGATCAGGATTGGGAGATCTGGGGCAATTAGACCACTGGTTGATTTATTAGGGAATGGAACGCCAAGAGGGAAGAAAGATGCTGCCACCGCCTTGTTTAATTTGTCAATATATCATGAAAACAAGAGTCGGATTGTGCAAGCCGGTGCTGTGAAGCACCTTGTGGAATTAATGGATCCAGCAGCTGGAATGGTAGATAAGGCTGTGGCTGTTTTAGCTAATCTTGCCACAATTCCAGAAGGGAGAAATGCCATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTCGTTGAGTTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCAGCCGCTCTTCTACATCTTTGCTTATACAGTAATCGATACTTAAGCATGGTGCTCCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAGTCAGGAACGCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTTAACCAATTTAGAAGTCAAAGACATGGTAATGCAGGGAGAGGCTGA 3243 0.4539 MLGICHMRRIWDRVGLRRAQVDPCSTPPPSLPSVPAVIPNASEKKRPAEIAPNAPIKKRCVSCMAKMLLNSIEEVYQSFLEESRLAQNSPAALAAERERQMRVLMSLRVRYRCTVERWNIYVSLVLSALRDFHEDCIALVLALTEHPIPLVDAITSGGAQKTILLPSTFRLPSLITEARTRGXMGKYGTGFEMTLLVAFAILVAIAREKDRNMLQPLYRAIEKANLCHWKALMQAGLLFKFSVTDAGVMEISLLKVLVNGISSFLNLSSSGNKNSEPVSKYYEKAEETLKLLKPIVDALVNFELASDEVLNKAFEEVGQAVDELRELFGNWHPLSSKVYFVKQVESLISRIQTSGLKIFQQLKTSHLSLPDELNTVHVEHCVQKLKLLGHEEETLSVIKEAISEQEKGVGPSSEVLANIAESLGLRSNQEILIEAVALEKLKENAEQAENIAEAKYIDQIITLVTRMHDRLVELKQAESSSPVPVPPDFCCPLSLDLMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPVDPIKSTNFNQVSFLHGYMESGAVFAHSRANQPSSPEAARSRSFSSPGKSLPSSGGIHKEGTSPFHPRSTSEGSLSGMANGQCLDVARISMTGSDGRSASSDERSEDSVVQPPVSQPITESSNAFSSEQSQTHVGMASESGAVSGVQGKQGDGNIVSQLSTTPGNSRDASVVVDSGPDATGAAAISAPQREPEFSPRLVETRSRNQSIWRRPSDRFLPRVVPSGGETRADLSGIETQVRSLVEDLKSSSLDTQREATAKLRLLAKHNMDNRLVIANCGAISLLVDLLQSTDTVIQENAVTALLNLSINDNNKTAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKSRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLYSNRYLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1955 1080 SMART arm_5 1031 1071 IPR000225 GO:0005515
Dere04g1955 1080 SMART arm_5 989 1029 IPR000225 GO:0005515
Dere04g1955 1080 SMART arm_5 867 907 IPR000225 GO:0005515
Dere04g1955 1080 SMART arm_5 908 948 IPR000225 GO:0005515
Dere04g1955 1080 SMART arm_5 826 866 IPR000225 GO:0005515
Dere04g1955 1080 SMART arm_5 949 988 IPR000225 GO:0005515
Dere04g1955 1080 ProSiteProfiles U-box domain profile. 484 558 IPR003613 GO:0004842|GO:0016567
Dere04g1955 1080 PANTHER U BOX DOMAIN-CONTAINING 277 1069 - -
Dere04g1955 1080 MobiDBLite consensus disorder prediction 586 611 - -
Dere04g1955 1080 Pfam Armadillo/beta-catenin-like repeat 867 906 IPR000225 GO:0005515
Dere04g1955 1080 Pfam Armadillo/beta-catenin-like repeat 910 947 IPR000225 GO:0005515
Dere04g1955 1080 Pfam Armadillo/beta-catenin-like repeat 828 865 IPR000225 GO:0005515
Dere04g1955 1080 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 960 1001 IPR000225 GO:0005515
Dere04g1955 1080 SUPERFAMILY ARM repeat 797 1069 IPR016024 -
Dere04g1955 1080 FunFam RING-type E3 ubiquitin transferase 782 1075 - -
Dere04g1955 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 562 IPR013083 -
Dere04g1955 1080 CDD RING-Ubox_PUB 486 538 IPR045210 -
Dere04g1955 1080 MobiDBLite consensus disorder prediction 623 637 - -
Dere04g1955 1080 MobiDBLite consensus disorder prediction 664 728 - -
Dere04g1955 1080 SMART Ubox_2 488 551 IPR003613 GO:0004842|GO:0016567
Dere04g1955 1080 Pfam U-box domain 485 555 IPR003613 GO:0004842|GO:0016567
Dere04g1955 1080 FunFam RING-type E3 ubiquitin transferase 484 559 - -
Dere04g1955 1080 MobiDBLite consensus disorder prediction 585 741 - -
Dere04g1955 1080 Coils Coil 428 458 - -
Dere04g1955 1080 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 837 879 IPR000225 GO:0005515
Dere04g1955 1080 SUPERFAMILY RING/U-box 473 562 - -
Dere04g1955 1080 Gene3D - 786 1075 IPR011989 -
Dere04g1955 1080 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 919 961 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1955 Dere-ChrDere04 22356219 22374490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1955 445 1080 U-box Gene Family AT2G23140 63.231 0.0 732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1955 04 22356219 22374490 Dere05g0040 05 569443 573102 CCT