Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1935 ATGGCATCTTCATCTGGTAGTCTTGACACTTCTGCCAACTCCCACCCAAGCTTCACTTTCTCTACGCACCCATTCATGACCACTTCCTTCTCTGAGCTTCTCGCTTCTCCCGCCGCCGACGACAATTCCGCCTCCGCCGTTGATAAGCCGCGCGGATTGTCGGATCGTATAGCTGAACGAACTGGGTCGGGTGTGCCCAAATTTAAGTCGATCCCACCTCCCTCGCTGCCTCTCTCTCCTCCTGCCATTTCTCCTTCTTCTTACTTCGCTATCCCTGCTGGGTTGAGCCCAGCTGAGCTTCTCGACTCGCCTGTTCTGCTTAATGCTTCTAATATTTTGCCATCTCCAACTACTGGAGCATTTTCTGCTCAGGCCTTTAATTGGAAGAGCAGCTCTGGGCAAAACCAGCAAAATATCAAAGAAGAAGACAAAAACTTCTCAAGTTTCTCGTTTCAACCCCAAGCTAGGCCTCCTCTTCCACCCGCAACAACGTTTCAATCTTCAGCTACCTCGAATCAAACTCAACAGGCATGGAGTTTTCAAGAAGCCCCCAAGCAAGACAGCTTTTCTTCAGGAAAGAGTATGGTGAAAGCCGAAAACGCTTCTTTCCAGAGCTATTCCACTGAGATTGTTAATAATGTCCAAACAAACCATAATAGTGGGTTTAAATCGGATTATAGCAATTATCATCCACAATCTCAGACCTTAAGCAGAAGATCAGATGATGGGTACAACTGGAGAAAATATGGGCAGAAGCAAGTGAAAGGAAGCGAGAATCCAAGAAGCTACTACAAATGCACATACCCCAATTGCCCAACAAAGAAGAAGGTTGAGAGGTCTATGGACGGGCAAATCACTGAGATAGTTTACAAGGGAACGCATAACCATCCCAAGCCTCAGGCAACAAGAAGAAACTCATCAAATGCATCTTCTCTTGCAATTCCTGCTCCAAATTCTGTGACTGCTGAAATCCCAGATCAATCATTTGCCACCCATGGTAATGGGCAAATGGATTCAGCTGCAACACCAGAGAACTCATCGATATCCATGGGAGATGATGATTTTGAGCAGAGTTCCCAAAAGAGTAGATCTGGAGGAGATGAGTTTGATGAGGATGAGCCTGATGCCAAAAGATGGAAAATAGATGGGGAAAATGAGGGTATGTCGGCAGCTGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTTGTCCAGACAACCAGTGACATAGATATTCTAGATGATGGATACAGATGGAGGAAATATGGGCAGAAAGTAGTCAAGGGGAATCCAAATCCAAGGAGTTACTACAAATGCACACACCCAGGATGTCCAGTGAGGAAGCACGTGGAGAGAGCCTCACATGACCTCAGGGCAGTGATCACAACCTACGAGGGGAAGCATAACCATGATGTCCCTGCAGCCAGAGGGAGTGGTAGCCATTCTGTGAACAGACCTCTGTTAAACAATTCCACAAACACCAACAGTGCAATCACCACAGCCATAAGGCCTTCTGTTATTGCCCACAACACTAACAACACCATGAACAATTCTATTCAGAGTTTTAGAGCACCAGCGCAAGCATCGGCCCCAGAAGGGCAATCACCCTTCACCCTAGAGATGCTTCAGAGTCCAGGAAGCTTTGGGTTCTCTGGGTTTGGGAATCCAATGGGGTCTTTCATGAATCATAATCAGCAGCAACCACAATCTGACAATGGGTTTTCTTCTAGAGCCAAAGAGGAGCCCAGAGATGATGTTTTTCTTGATTCTTTGCTATGCTGA 1779 0.466 MASSSGSLDTSANSHPSFTFSTHPFMTTSFSELLASPAADDNSASAVDKPRGLSDRIAERTGSGVPKFKSIPPPSLPLSPPAISPSSYFAIPAGLSPAELLDSPVLLNASNILPSPTTGAFSAQAFNWKSSSGQNQQNIKEEDKNFSSFSFQPQARPPLPPATTFQSSATSNQTQQAWSFQEAPKQDSFSSGKSMVKAENASFQSYSTEIVNNVQTNHNSGFKSDYSNYHPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSMDGQITEIVYKGTHNHPKPQATRRNSSNASSLAIPAPNSVTAEIPDQSFATHGNGQMDSAATPENSSISMGDDDFEQSSQKSRSGGDEFDEDEPDAKRWKIDGENEGMSAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLLNNSTNTNSAITTAIRPSVIAHNTNNTMNNSIQSFRAPAQASAPEGQSPFTLEMLQSPGSFGFSGFGNPMGSFMNHNQQQPQSDNGFSSRAKEEPRDDVFLDSLLC 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1935 592 MobiDBLite consensus disorder prediction 299 313 - -
Dere04g1935 592 MobiDBLite consensus disorder prediction 39 76 - -
Dere04g1935 592 Gene3D WRKY domain 399 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 SUPERFAMILY WRKY DNA-binding domain 239 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 MobiDBLite consensus disorder prediction 291 313 - -
Dere04g1935 592 Gene3D WRKY domain 226 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 ProSiteProfiles WRKY domain profile. 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 MobiDBLite consensus disorder prediction 219 244 - -
Dere04g1935 592 MobiDBLite consensus disorder prediction 326 395 - -
Dere04g1935 592 MobiDBLite consensus disorder prediction 356 384 - -
Dere04g1935 592 MobiDBLite consensus disorder prediction 149 193 - -
Dere04g1935 592 MobiDBLite consensus disorder prediction 468 491 - -
Dere04g1935 592 FunFam WRKY transcription factor 230 300 - -
Dere04g1935 592 SMART WRKY_cls 412 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 SMART WRKY_cls 240 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 MobiDBLite consensus disorder prediction 326 355 - -
Dere04g1935 592 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 508 IPR044810 GO:0003700
Dere04g1935 592 MobiDBLite consensus disorder prediction 552 585 - -
Dere04g1935 592 MobiDBLite consensus disorder prediction 219 240 - -
Dere04g1935 592 Pfam WRKY DNA -binding domain 413 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 Pfam WRKY DNA -binding domain 241 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 SUPERFAMILY WRKY DNA-binding domain 404 472 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 MobiDBLite consensus disorder prediction 161 193 - -
Dere04g1935 592 MobiDBLite consensus disorder prediction 556 574 - -
Dere04g1935 592 ProSiteProfiles WRKY domain profile. 407 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere04g1935 592 FunFam WRKY transcription factor 33 399 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1935 Dere-ChrDere04 22117900 22120565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1935 65 591 WRKY Transcription Factor Family AT2G38470 46.283 2.30e-119 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere04g1935 WRKY 1.6e-25 CL0274