LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1925	ATGACGAAATTGACTATGGAAAAACGCGTGTTCTGCACCACTGCACCTCCTTCTCCGTGCATCTTTCTTCAGTCTCTCGATTTACTTCTGTTTGTCTTGTCTCCTTGTATTCTACCTTTTGCGATTCTTTTGATGCTGCTTTTTCTCCTCATCGCCACCACCACTACTGGCCTCTTCTCGCATCTCCCCCTCCGAGAAACTCACCGTCAACATCGCGATCGCGACTTTAGAAGCCTTCCTCACGCACCTCTGCCGCCACGCCCACCACGCGTGGGCCAATCGCCGCCCCTGGACCGAACTCATCGATCGGACCGCCATCACCAGACCGCAATCACTAGCCGAAGCCGCCTCCCGAATCCGGAAGAACTTGTACTACTTCCGCGTCAACTACCTTGTCCTACTCGCTCTGGTACTCGCAGTTTCCCTCCTCGCCCACCCTCTGTCCCTTCTGCTCCTAATCGCTCTGATCGGAGCCTGGCTTTTCCTCTACATTCTCCGGCCGTCGGATCAGCAGCTCATGATCTACGGCCGCACGTTCACCGATTGCGAGACTCTGATCTGACTGAGTGTGGTCACCGTCGTCGTGATTCTTCTGACGAGTGTGGTGTCGCTGCTCGTCTCGGCCTTCACGATGGGGATGGGAGTAGTGTGCTCTCATGCAGCTTTCCGTCTCCCCGAGGATCTGTTTCTCGACCAACAAGAGCCATGGGCTTCTGGGCTTTTTTGCTTGTTCGCGGGATTTTGAAACCCGCAACCTTAAAAAGTGGGGTTCCCTCTTCTGGAGGCGTCCCCTGTGTGCCAGTAAATGACACGATTATCGAGATTATAGGATCAGATCCAGAAGACTACAAGATAGGAAGAAAGTTCGGCATTAGTATTGTTGAAGATGTTATTTTGAAAGAGCGTTTTGATGTGGAATGAGTGGAGTCTCTGGTTTGTAATATTAGAATTTTCAATCCTGCAATCAAATCTCCAAGACCACTCCAGTTCAGGAAGAGCACGATGCCCTTTATTCGAGTTCGAAGTTTGCTAATGCAACCCGAGTTATGGAGGTTTGTGGGTTTTGTGTCGAGTCTTGTTGGGCTGCTCTGTTTTGCTCTGAGTGAGTCTTTCGAACTACTTTTCGGAGAGTGGAATTGCCTTAAGATGTTTCTTTATATTGCGATAAGTTGCATCATCTTGAGCTTCATGTTGTTTGCATACAAGTTGCAACTTCCAAGCAATCGCTTGTTTAAAATCCATCTGGGTTATCTAGTTCTGATGCTAACCTCTTTCTTCACGTATTTCTACGATGAAAATCCCTACCCTTTAAGCTTGATTTCCTGTGCTTCCTTTGCTGTGGGGTCTCTGAGCTTGTCAAGGCAGATTGACCTTGGATTTGAGGTTGATTTGTTAAATTTTTCCCTGGGTTTACTCGTAGTTCTACTCATGAAGATCAACCGGTGGCTCGCTTTTGCAGGAGCGCTTATCTGTTATGTGCTCCTGTTTCTTCGTTCTTATCCGTATTCCCAGGTCCATACTGGGACTGTTAATCTCACTGAACATGTAGCTGTAGAAATCGATACTCCAAACGAAGTTGAAGAAGGAGCTCATAGTAACAGCGAGAACGGATATTACACCATTCGGAGAGAAGACAGAGTTCTATTTCCTGACAACATTGAAGAAAAACTTAAGCGCGCAGTGGCTGCTGGGCTTAATGAGAAGTGCTGTCATATCTTCATCCGTTGGCGAAGGCAGTTATTGGATGATAAGCTTTTGAAAATTCGGATACAGAAGCTGAACCTCAAAGAGATCGACAAGATACCGTTGAACTTCCTCGAACACAAGATCAAACGTTGGAATACGATTTCCGACTACGTTGTAAGGACACTACTCCCTGACGAACGGGATCTCTGCAGCCGTCTCTTCTCTGAATCCACACATTACGGGGTTTTCTGTTTCAATGAGCTATGTCAAGAACTCATGATTCAACTACTCAACTTCGCGGATGCCATCGCAGCCGGGAACGGCTCGCCGGAGCGTTTGTTCAGAATACTCAGTATGTTTGAGACACTGAGGCTCCTATTACCGGACTTTGATTCTTTATTCTCCGATCAGTACTGTGTCTTTCTCAGAGATAGGGCAGTCAAAATCTGGCGAAGGTTGGGGAAAGAAATCAGAGGTATTTTCATGGACCTGGAGAATCTGATTCTTCAGGAACCAGAAAAGGTGGACCTTCCCAATGGTGGGCTTCATCCCATAACTTACTACATAATCAACTACCTCAATGTGGCGTGTAAATCATGGCGAACCCTTGAACGTGCTTTTAGAGACAGCGAGCTCCCTTTAACAACATCCTCAGAAATCATAAACGGAGAGTCATCGTCTTCTCCGTTTTCTTCCCAGGTGACTCGAATTATGGATTTGTTAGACAAAAGTTTAGAGACAATCTCGAGAATGTACGAAGACCCTGTTTTGTGCCCTGTTTTTATGATGAACAACATGAGGTACATGGTTCAGAGTGCTAAACGCAGTGAAGTTAGGAGGATGCTGGGTGAAGAGTGGATCGAAGAACACGTTGGGAAGGTTCGAGAATATCTTGTGGAGTACAAGAGAAAGTCATGGGGTGAGATGTTTGACAGGTTGACGACAAAGTCACTGACACTGTCACCTGATGCAGAGAAGGTGAAGCTGTTTAGGATAGAATTTGAGGGGATAATCCAAAGGCAACGGAAATGGGTTATGTTTGATGAGCAGCTGAGAGAGAAGGTAATCAGTTCATTGCAGAAAACATTGCTGCCCAAGTATGAAAAACTCATGGCAAGATTCCATGATGTTGTGGAAACTGGAGAAGATACTCATATGATGCAAGAAGATATTGTGGCTGGAATCAACAGGCTGTTTAAGGGAAAAGATGAGCTTAAAAACTGCAGGGATATTCAACCCGCATGGACCGTAGAGAAGCCCACTACCGAAGATTTTTATAAATGGACAAAGCACGGTCAGGGGACAGTTCTTAATTCTACAATGCCCAGAATGAGCCCTATTACTCAATTCTGGTGCATCTACAAGCTGAATCGAGGTTGCCAAGCAATTAAACAGGTCCAACAGACAGGAGAAAATCCAGAAAAGTATCAGATTAGGTATACTGGCTTTCATACATGCACAATGAATCCCAGTAATACTCACCACTCAACTTCTGCTAATCTTCATCCTCAATCTTCAACCCAAACCCTAAAACAAGAATAA	3228	0.4582	MTKLTMEKRVFCTTAPPSPCIFLQSLDLLLFVLSPCILPFAILLMLLFLLIATTTTGLFSHLPLRETHRQHRDRDFRSLPHAPLPPRPPRVGQSPPLDRTHRSDRHHQTAITSRSRLPNPEELVLLPRQLPCPTRSGTRSFPPRPPSVPSAPNRSDRSLAFPLHSPAVGSAAHDLRPHVHRLRDSDLTECGHRRRDSSDECGVAARLGLHDGDGSSVLSCSFPSPRGSVSRPTRAMGFWAFLLVRGILKPATLKSGVPSSGGVPCVPVNDTIIEIIGSDPEDYKIGRKFGISIVEDVILKERFDVEXVESLVCNIRIFNPAIKSPRPLQFRKSTMPFIRVRSLLMQPELWRFVGFVSSLVGLLCFALSESFELLFGEWNCLKMFLYIAISCIILSFMLFAYKLQLPSNRLFKIHLGYLVLMLTSFFTYFYDENPYPLSLISCASFAVGSLSLSRQIDLGFEVDLLNFSLGLLVVLLMKINRWLAFAGALICYVLLFLRSYPYSQVHTGTVNLTEHVAVEIDTPNEVEEGAHSNSENGYYTIRREDRVLFPDNIEEKLKRAVAAGLNEKCCHIFIRWRRQLLDDKLLKIRIQKLNLKEIDKIPLNFLEHKIKRWNTISDYVVRTLLPDERDLCSRLFSESTHYGVFCFNELCQELMIQLLNFADAIAAGNGSPERLFRILSMFETLRLLLPDFDSLFSDQYCVFLRDRAVKIWRRLGKEIRGIFMDLENLILQEPEKVDLPNGGLHPITYYIINYLNVACKSWRTLERAFRDSELPLTTSSEIINGESSSSPFSSQVTRIMDLLDKSLETISRMYEDPVLCPVFMMNNMRYMVQSAKRSEVRRMLGEEWIEEHVGKVREYLVEYKRKSWGEMFDRLTTKSLTLSPDAEKVKLFRIEFEGIIQRQRKWVMFDEQLREKVISSLQKTLLPKYEKLMARFHDVVETGEDTHMMQEDIVAGINRLFKGKDELKNCRDIQPAWTVEKPTTEDFYKWTKHGQGTVLNSTMPRMSPITQFWCIYKLNRGCQAIKQVQQTGENPEKYQIRYTGFHTCTMNPSNTHHSTSANLHPQSSTQTLKQE	1075

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1925	1075	Gene3D	WRKY domain	972	1051	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1925	1075	Gene3D	Exocyst complex component Exo70	522	970	-	-
	Dere04g1925	1075	MobiDBLite	consensus disorder prediction	1049	1075	-	-
	Dere04g1925	1075	ProSiteProfiles	WRKY domain profile.	979	1051	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1925	1075	MobiDBLite	consensus disorder prediction	70	161	-	-
	Dere04g1925	1075	MobiDBLite	consensus disorder prediction	97	111	-	-
	Dere04g1925	1075	SUPERFAMILY	WRKY DNA-binding domain	978	1050	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1925	1075	SMART	WRKY_cls	984	1050	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1925	1075	Pfam	Exo70 exocyst complex subunit	612	942	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Dere04g1925	1075	SUPERFAMILY	Cullin repeat-like	561	961	IPR016159	-
	Dere04g1925	1075	Pfam	WRKY DNA -binding domain	985	1048	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1925	1075	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	541	962	IPR004140	GO:0000145\|GO:0006887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1925	Dere-ChrDere04	22034829	22045797	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1925	551	963	EXO70 exocyst subunit family	AT5G58430	42.353	5.78e-108	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere04g1925		Exo70	1.6e-83	CL0295