LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1881	ATGGAAGAAGGGTTGGTGGTGCTGATGGTGATGCTATGTCTGTTCCCTCTGAGCTTGAGCCTCTCTTCTTCACGTCTCAACAGCGAAGGTTTGGCGTTGTTAATGTTGAGAGACAGAGTAGTGAGAGACCCATATGGAGCTTTATCCAATTGGAAATGGAATGGTGAAGTTGCAGACAATAGTCCTTGTTCATGGTTTGGAGTGGAATGCTCCCACCATGGCAATGTTGTTTCCTTGAATTTGAAAGACCTTTGTCTCGAAGGAACACTGGCACCTGAAATTGGCAAGCTGACTCACATAAAATCTATCATTTTGCGCAACAACTCTTTCTACGGAGAGATTCCTATAGAGATATCAAAATTACAAAAACTGGAAGTTCTTGACTTGGCATATAACAACTTTCGTGGACCATTTCCATCAGACATAGGCAGCAATCCATCCCTCACTACCCTGCACATAGGGCAACATGGGGATATGGCAAACAAGCGAAAACTTCTTCATAGAGCAAAAGCAAGTCATAAAAGAGATTATGAGAAAGACCTTCTTTCACCATCACCATCACCATCATCATTCTCCTCTTCATTACCACCAGATTCTAGTCCTTTCTCACCATCAGAGCCACCTTCAAATCCACCATCTGCATCAACTCCATCACCATATTCACCCTCACCATTAAGTTCCCCAGAAGTTTCCCCTTCACCTTCTCCGTCCACTCGTTTTCTCACACCTTCAACTTCACCAGCGGTGGCACCGACCACAGGCATATCACCATCAGCAAATACTCCTACTGTTCTGTCCTCTCCACCACAGTCCAATTGGATTTCAGCGCCTTCCCCTGCTTCATTTTGGAACCAAGGGAACACAAACAGTTTCAAGCACCAAAAATCAGTGATCATTTGGTCTGCAGCTGGGGGCATATCCTTACTGGTTTTTGTGTCGGCCATTGCTTTTGCTTGCTTCCGAAATAGCAGGGTTGTAACTGTAAAACCTTGGTCCACAGGGTTAAGTGGGCAACTACAGAAGGCTTTTGTAACAGGTGTGCCAAATCTCAGACGAGCAGAAATTCAAGCAGCTTGTGAAGATTTCAGCAACATTATCGGTTCTATCCCAGAGGGGACTGTTTATAAGGGGACTCTCTCCAGTGGAGTTGAGATAGCCGTAGCATCCACTGCAGTAACTTCATCTAAAAATTGGCCTAAAACGATGGAAGCTCAGTTTAGAAAGAAGATAGAGACACTATCCAGAGTGAACCACAAGAATTTTGTGAATCTTATTGGGTATTGTGAAGAGAAAAAGCCTTTCACAAGAATGATGGTCTATGAGTATGCTCCAAATGGAACTCTCTTTGAGCATCTACACATTAGAGAAGCAGAGCAGCTAGACTGGAGAATGAGAGTGAGGATAGCGATGGGAATAGCTTACTGTCTGGAGTATATGCATCAGCTGGAACCACCCATTGCCCACAGAAATCTGCAATCATCTTCAATATACCTCACTGAAGACCATGCTGCTCAAATATCAGATCTTGCTTTCTGGACTGACATGGCTGCTGCAACAAAGAAAGGCTCTGCAGCTACACAGCTCTACGAAACACCATCAGCGTATACAAAGGGAAATGTTTATAGCTTTGGTGTCATACTGTTTGAGTTGATCACAGGGAGGATTCCCTGTGCCGTGGAAAATGGCTCTCTTTCACAATATCTAAAAATGGGGCAATCCTTGAGAGATATGGTGGATCCAACTCTAATCTGTGTGCAAGCAGAAGCGGTTGAGAAATGGTGGGAAGTGATGAACGAGTGTTTGCATTCAGATCCAGAGAGAAGGCCAACTCTGAGAGAGGTTGCAGCTAAGTTGAAGGAAATAAGTGGAATGGGGCCTAGTGGAGCGACTCCAAAATCATCTCCACTTTGGTGGGCAGAACTCGAAATCATGTCCACGGATTCGATCTGA	1950	0.4456	MEEGLVVLMVMLCLFPLSLSLSSSRLNSEGLALLMLRDRVVRDPYGALSNWKWNGEVADNSPCSWFGVECSHHGNVVSLNLKDLCLEGTLAPEIGKLTHIKSIILRNNSFYGEIPIEISKLQKLEVLDLAYNNFRGPFPSDIGSNPSLTTLHIGQHGDMANKRKLLHRAKASHKRDYEKDLLSPSPSPSSFSSSLPPDSSPFSPSEPPSNPPSASTPSPYSPSPLSSPEVSPSPSPSTRFLTPSTSPAVAPTTGISPSANTPTVLSSPPQSNWISAPSPASFWNQGNTNSFKHQKSVIIWSAAGGISLLVFVSAIAFACFRNSRVVTVKPWSTGLSGQLQKAFVTGVPNLRRAEIQAACEDFSNIIGSIPEGTVYKGTLSSGVEIAVASTAVTSSKNWPKTMEAQFRKKIETLSRVNHKNFVNLIGYCEEKKPFTRMMVYEYAPNGTLFEHLHIREAEQLDWRMRVRIAMGIAYCLEYMHQLEPPIAHRNLQSSSIYLTEDHAAQISDLAFWTDMAAATKKGSAATQLYETPSAYTKGNVYSFGVILFELITGRIPCAVENGSLSQYLKMGQSLRDMVDPTLICVQAEAVEKWWEVMNECLHSDPERRPTLREVAAKLKEISGMGPSGATPKSSPLWWAELEIMSTDSI	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1881	649	MobiDBLite	consensus disorder prediction	232	279	-	-
	Dere04g1881	649	SUPERFAMILY	Protein kinase-like (PK-like)	346	618	IPR011009	-
	Dere04g1881	649	Gene3D	Phosphorylase Kinase; domain 1	321	442	-	-
	Dere04g1881	649	PANTHER	PROTEIN MALE DISCOVERER 2	8	646	-	-
	Dere04g1881	649	SUPERFAMILY	L domain-like	40	154	-	-
	Dere04g1881	649	Gene3D	Transferase(Phosphotransferase) domain 1	443	625	-	-
	Dere04g1881	649	Pfam	Protein tyrosine and serine/threonine kinase	364	618	IPR001245	GO:0004672\|GO:0006468
	Dere04g1881	649	Pfam	Leucine rich repeat N-terminal domain	27	71	IPR013210	-
	Dere04g1881	649	MobiDBLite	consensus disorder prediction	200	231	-	-
	Dere04g1881	649	FunFam	Inactive receptor-like serine/threonine-protein kinase	334	442	-	-
	Dere04g1881	649	ProSiteProfiles	Protein kinase domain profile.	360	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g1881	649	MobiDBLite	consensus disorder prediction	167	181	-	-
	Dere04g1881	649	MobiDBLite	consensus disorder prediction	183	199	-	-
	Dere04g1881	649	MobiDBLite	consensus disorder prediction	167	279	-	-
	Dere04g1881	649	Gene3D	Ribonuclease Inhibitor	25	194	IPR032675	-
	Dere04g1881	649	FunFam	Leucine-rich repeat receptor-like kinase	32	158	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1881	Dere-ChrDere04	21538085	21543052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1881	1	619	Receptor kinase-like Gene Family	AT5G16000	26.596	3.12e-48	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VI-2	Dere04g1881		PK_Tyr_Ser-Thr	1.1e-30	CL0016