Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1872 ATGTCGACCCAGTCCGACCCCCACCTCAACCCTCTTAGTCAAATGCTTCAGAGCATATTCTCCGACAACAGCAACATCATGCTCGTCGCCATCATTTCTCTGCTTCTCGTCATCCTCTTCGTCCTCATCCTCCATGTCTACGCCAAATGGTTCTTGGCCCAGGCCCAGGCTCAAGCCCATGCTCGTCGCCGCCGCAGGCGGCGCCGAGCCTCCGTGACCGTCTCTGATGTCATCGGCCCCGCCCGGTTCCACCACTTCCACAGCTTCAATCAACAAGAGTCCCCCATTTCGAATTCTCCGACCAAAGGGCTCGATTCGGCGTCCATTGCTGCGATCCCTGTGTTTGTATACGAAGCAGAAACAGACGAAGAAGAAGAGTTGGAGTGCGTGATTTGCTTGAGCGTTTTTGAGGATGGAGAAATCGGGAGGAGTTTACCCAAGTGTGGTCATTGTTTTCATGTGGAGTGCATTGATATGTGGTTGAGTTCGCATTCGAATTGCCCGATTTGCAGGGCCCCGATAGTGGGAGGGATCGTGGAGCATGATTCTCAGTTGGGCTCTGTTCCTGGGGATGATTCCTCTGCTGTGCTTGAGATTGTGGTGGATCCTCCGAGCTCTGAGATTAGCGAGAATGAGGGTGGCAATGAGAGCAGTACTAATAATAATGGTAATGAAGGGGCAGGTGATTCTACTATTTCCATGTCAGAAACTTCATCCTCATTGCTGGGTTGCTCCTTGAAGAGGATGCTGAGCAAAGTTTTTCCTTCTTCTAATGTCCAAGAGTTAGACCATTGA 795 0.5119 MSTQSDPHLNPLSQMLQSIFSDNSNIMLVAIISLLLVILFVLILHVYAKWFLAQAQAQAHARRRRRRRRASVTVSDVIGPARFHHFHSFNQQESPISNSPTKGLDSASIAAIPVFVYEAETDEEEELECVICLSVFEDGEIGRSLPKCGHCFHVECIDMWLSSHSNCPICRAPIVGGIVEHDSQLGSVPGDDSSAVLEIVVDPPSSEISENEGGNESSTNNNGNEGAGDSTISMSETSSSLLGCSLKRMLSKVFPSSNVQELDH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1872 264 SMART ring_2 129 170 IPR001841 -
Dere04g1872 264 SUPERFAMILY RING/U-box 117 175 - -
Dere04g1872 264 MobiDBLite consensus disorder prediction 204 236 - -
Dere04g1872 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 176 IPR013083 -
Dere04g1872 264 CDD RING-H2_EL5-like 129 171 - -
Dere04g1872 264 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Dere04g1872 264 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 175 IPR044675 -
Dere04g1872 264 MobiDBLite consensus disorder prediction 208 236 - -
Dere04g1872 264 FunFam RING-H2 finger protein ATL1 90 176 - -
Dere04g1872 264 Pfam Ring finger domain 128 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1872 Dere-ChrDere04 21468655 21469449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1872 20 172 Rapid Response to Elicitors AT3G16720 39.216 2.05e-29 111