Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1862 ATGCCGGTGGAGGAATTGAAGTATTCTGGGAGGAGAAAGCGCAAAAGAGGGTCTGGAAGAAGAAAACTCGTCGTCAATGAGAGAGTGGAGGTGAGGAGTGTGGAAGAGGGCTTTTTGGGCTCATGGCACCCAGGAACTGTTATCCAATGTGGAAAGCAGAAGCGTTATGTCAAATATGACAATGTTTTAGATGATAATGGATCAAATTATCTTGTTGATGTAGTGGTTGTTCCGCCTATTTTGGATGGCGCTAGTTCTACAATTTGCAACGAACGTGGATTTATTAGGCCACTGCCTCCTTTGATGGAATTTGGGATTTGGGACCTTCCATTTGGTCTCTGTGTTGATGTGAACTATCAAGAAGCTTGGTGGGAAGGTGTTATTTTTGATCACTGTGATGGGATGGAGAAGAGATCCGTATTTTTCCCAGATTTGGGCGACGAAATGAAAGTTGGAATTAGCCAGATGCGTATTACTCATGACTGGAATGAAGTTACAGAGGATTGGGAGCGACGGGGGATGTGGGTATTTCTTGAATTGGTTGAAGAGTGTGAACAGGATACATATGTAGCAGTTTCAGTAAAGCAAATCTGGTATGATGTACGTGCGAAAAAAGATTTCAAAAATATTATGGACTGGACTTGTAAATTGAAAGACTTGTGGAGAGTTCTGGTATCGGAGGTCGTTAATGACTACTTCACACTTACATTAAAAGAAGTTTTCACAGTCTTGGACCTTTCAAAAGGTTTCCTGACAGAAGCACCAGTACTAGAGTCAGGTGAACCTACTGCTAATGTTCACTTCAATGCGGAAGGTGATATGGGCAACTTTCATTCAGTTTTAAATTCGGATAATCAATCAAACAGAAAATTAAATGTTAGTTATGATGCTGGTCCTACTAATGGCTCTGACATTATAATGGTTCAGAACCTTGTGGAAAAAGGTGACTTGTCAAATATCTTGGATACTGATCGAAACAGTGGTAGCATGACTCTTATCCAGAAGAAGTGTGAAATGGAGACCTTGGGGGATGGAGCATCAAATATGCATGTTGTGGCAGACTTAAACAAATCCTTCCGTGAGAAAGAAGTCTTGGTACAGAAAGAATCTATATCTCCAGTAGAAGAGTTCGTTCCAGATATTCCAGAAGGAACTTCCTGCTGTGCTGGTAAAGTAGAATCCGGTGCTAGCTGTTACACAAGAAATAGACAACAGGGATTCCCAACTTGTAGAAGGTCAGCATGTTGGCAACCACTGATACTTTCTGGAGTCGAATTCTGCCCCGATGCTGTTATTCAATATGCACTTGCATCTGAAAGGAAGATCAAGGAACAATTGAAGACAAAAGTTAGGAAACATATTGCATATCTTGGATGGAAAATTGAGTGGTCAAAATTAGAAACCCCATATCCTGGACAACGACGATATAGGTACATCTCACCTGATGAACAGGACAAACAGGTTTACATGTCACTTCGTCAAGTTTGTATACATCTTAAACAGGACAACAATATGGACTCTTTGTTGTCCCAAGATAATCAGAGACGGATGAATCCTGCAATTGACAGTAATATTTCAAATCCTGCTATTTTGCCACCTCCTTCTGTTCAAGTTGTAGTTGAACCCAAATTTTGTCCTGAGGCTGTTTTAAGATATTACTTACATGCATTGCAAAAGGTCCCCATGGCAGATAAAAAATGTATGATAATAAAAGCAAGAAAGCACCTGTTAGCAGCAGGATGGAATTTTGACTACCCAGCTGTGAGAGGAAGGGGATTGATATACAGGTCACCACAAAATCGGTGTTTTGGCTCACTTCGAGTAGCATGCAGAGCATATATTGAAGAATGTCTTCCTCAGTGGATTAGTTCTGGCACGATGGCTCTTGATGTTTCAGGCACAAATGAGGAGAATATGAGTCAGGTTGATAGTGATAAATTATTAAGCTGTGTGTCTCAAATGCTTCAAAAGGAACCTGAATTGCATTATGCAAATGGTGTGCCAGCAAGTGGATCTGCTGGGCATGGAAAGCTCAAACGCTCAAGGAATTTACAGTCCAGCCTACCTAAAATCCAGAGAAAAGGATTACCTATTCGGTTACTCAGATCAAGCAAGAGGGTGCAGAAGGTCTGTGCTCCTTTTCCATCAAGCCATAAACCTCAAAATGTTCTGTCTTGGTTAATAGACTGCAATATGGTGTTACCAAGGTCTAAGGTCCATTACCAGGCAAGAGGCACAAGCCGTCGTATGGCGGAGGGACGAATAACTCGTGATGGAATCAAGTGCAGCTGTTGTCAGAAAGTATTTACTCTTGGTGGGTTTGAAAATCATGCTATTGGCCGTAGTAATTGCAGGCCTGCTGCTGCTAGCATCTTTTTGGAAAATGGTAAGTCACTCCTGGATTGCCAGATGCAAATAATGCATGATCGTAGGACAAGTGAAACTAAAACAAAACCATTGAAGGGTGTAAATCAAGATGAGAATGACTGCATTTGTACTGTTTGTCATTATGGCGGTGAACTAATATTATGTGATCAATGCCCATCCTCCTTTCATAAGAGCTGCCTAGGTTTGGAGGACATCCCTGAAGGTGACTGGTTTTGTCCATCATGTTGTTGTGGGATTTGCTGCCAAAGTAAAATTGAAGGGGCTGAGTATGAAAATTTCCTTTCTTGCCTTCAGTGTGAACATAAATATCATGCTAAGTGCCTGGGCAAAAGGTCTGTAGATAAGTCAGGTAGATGTCTGGATAATTGGTTTTGTGGAAAAAGCTGTGAAAAGATATATGCTGGCCTCCGAAAGCTACTAGGTGAATCTGTTGCTGTGAGTGCGAACAAATTAAGTTGGACATTGGTGAAGTATGTCGACTTTGATAGTTGTGATCTTGGTAACACTAAAAGTGACTTAATGGTAGAGAGTTACAGCAAGCTCAATGTTGCTCTTTCGGTGATGCATGAATGTTTTGAGCCCTTAAAGGAACTTTACTCTGGGAGGGATCTTGTGGAAGACGTTCTTTTCAGCAGATGATACCAACTTTCTCAATACAAAGACCTAGTGCATTTCTATGCCTTAAAAGTGTTGCTCTTGCATCTTCATGTTAGTGCAAGATTAGCAGATTTCTTGAGTATAGTTGATGTGATTCACAGTTATTCACAGTTCCTACTGTGTTTTGTTTCAGATGAAATAATTGGCCCATGTGCATTTTCGAGGTCAAAGCTTAATCGATTAAACTTCCAGGGCTTCTATACTGTAGTTCTAGAGAGAAATGAAGAATTGATTAGTGTGGCAACTGTTAGGGTCTATGGAGAAAAGGTGGCAGAAGTGCCTCTTGTTGGTACTAGATTCCAGTATCGCCGACTTGGAATGTGTCGCATTTTAATGAATGAGCTGGAAAAGAGGCTCATGCAACTAGGAGTGGAGAGGCTAGTTTTACCTGCTGTTCCAAGTGTGCTAGAAACATGGACCACTTCTTTTGGCTTTGCAAAGATGACAAATTCAGAGAGATCGCAGTTTCTGGACTACAATTTCCTTGACTTCCAGGATACCATCATGTGCCAGAAGCTTTTGACCAATACTCCTCTAGATTTAGTTTTGTCAACAGAGAGCCGGACAAAAACACATGATGTTTTATCTTGCAATACTGTTTTTGATCAGTCGAGCCAAGTATCTGAGGTATATCAGGAAGAAGAGATTGACAAAAGTGTGATGCTGGATCTTCCAATGGTGGAGACTTGTGCTGGCAACAATGATCGTCTTGGTAATGTTGCCATTGATTCATTTACCATGGTGAAGCAGGCAACTTTACAGGGCCCTCAGTCGAAGAATGGAAACATTCCAGAAAGCTCTCTTAAAGAGGGCCATTTAAGACATGTTTCCATCTACAGTGGCCCATTACTCGGGGGGTACCGCAAGTTGCATGGTCGTGTTCCATCTCTTCTAGTGTTAGCCACATTGAGTTCTTTGCCCGAAGATGCAAATCAGTGGTCCTCAAAGGTTAGTAGCCGTGGGGAGAATTGGTCTCCAAATGTTCTGTTTTTGAAGCCATGCTTTCATGTAATCTCCAACCTGAAATTATTGCAGCAGCCAAAATTTCGAGCAAGGGACACCAAGTAG 4113 0.415 MPVEELKYSGRRKRKRGSGRRKLVVNERVEVRSVEEGFLGSWHPGTVIQCGKQKRYVKYDNVLDDNGSNYLVDVVVVPPILDGASSTICNERGFIRPLPPLMEFGIWDLPFGLCVDVNYQEAWWEGVIFDHCDGMEKRSVFFPDLGDEMKVGISQMRITHDWNEVTEDWERRGMWVFLELVEECEQDTYVAVSVKQIWYDVRAKKDFKNIMDWTCKLKDLWRVLVSEVVNDYFTLTLKEVFTVLDLSKGFLTEAPVLESGEPTANVHFNAEGDMGNFHSVLNSDNQSNRKLNVSYDAGPTNGSDIIMVQNLVEKGDLSNILDTDRNSGSMTLIQKKCEMETLGDGASNMHVVADLNKSFREKEVLVQKESISPVEEFVPDIPEGTSCCAGKVESGASCYTRNRQQGFPTCRRSACWQPLILSGVEFCPDAVIQYALASERKIKEQLKTKVRKHIAYLGWKIEWSKLETPYPGQRRYRYISPDEQDKQVYMSLRQVCIHLKQDNNMDSLLSQDNQRRMNPAIDSNISNPAILPPPSVQVVVEPKFCPEAVLRYYLHALQKVPMADKKCMIIKARKHLLAAGWNFDYPAVRGRGLIYRSPQNRCFGSLRVACRAYIEECLPQWISSGTMALDVSGTNEENMSQVDSDKLLSCVSQMLQKEPELHYANGVPASGSAGHGKLKRSRNLQSSLPKIQRKGLPIRLLRSSKRVQKVCAPFPSSHKPQNVLSWLIDCNMVLPRSKVHYQARGTSRRMAEGRITRDGIKCSCCQKVFTLGGFENHAIGRSNCRPAAASIFLENGKSLLDCQMQIMHDRRTSETKTKPLKGVNQDENDCICTVCHYGGELILCDQCPSSFHKSCLGLEDIPEGDWFCPSCCCGICCQSKIEGAEYENFLSCLQCEHKYHAKCLGKRSVDKSGRCLDNWFCGKSCEKIYAGLRKLLGESVAVSANKLSWTLVKYVDFDSCDLGNTKSDLMVESYSKLNVALSVMHECFEPLKELYSGRDLVEDVLFSRXYQLSQYKDLVHFYALKVLLLHLHVSARLADFLSIVDVIHSYSQFLLCFVSDEIIGPCAFSRSKLNRLNFQGFYTVVLERNEELISVATVRVYGEKVAEVPLVGTRFQYRRLGMCRILMNELEKRLMQLGVERLVLPAVPSVLETWTTSFGFAKMTNSERSQFLDYNFLDFQDTIMCQKLLTNTPLDLVLSTESRTKTHDVLSCNTVFDQSSQVSEVYQEEEIDKSVMLDLPMVETCAGNNDRLGNVAIDSFTMVKQATLQGPQSKNGNIPESSLKEGHLRHVSIYSGPLLGGYRKLHGRVPSLLVLATLSSLPEDANQWSSKVSSRGENWSPNVLFLKPCFHVISNLKLLQQPKFRARDTK 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1862 1370 CDD NAT_SF 1084 1144 - -
Dere04g1862 1370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 816 887 IPR013083 -
Dere04g1862 1370 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1041 1189 IPR000182 GO:0016747
Dere04g1862 1370 SMART agenet_At_2 107 164 IPR014002 -
Dere04g1862 1370 SMART agenet_At_2 21 82 IPR014002 -
Dere04g1862 1370 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1036 1173 IPR016181 -
Dere04g1862 1370 CDD Tudor_Agenet_AtDUF_rpt1_3 23 100 - -
Dere04g1862 1370 SUPERFAMILY FYVE/PHD zinc finger 811 871 IPR011011 -
Dere04g1862 1370 Pfam Tify domain binding domain 753 805 IPR032308 -
Dere04g1862 1370 ProSiteProfiles Zinc finger PHD-type profile. 829 874 IPR019787 -
Dere04g1862 1370 MobiDBLite consensus disorder prediction 664 686 - -
Dere04g1862 1370 SMART PHD_3 831 872 IPR001965 -
Dere04g1862 1370 PANTHER PHD FINGER PROTEIN 12 555 1234 IPR042163 GO:0003714|GO:0045892
Dere04g1862 1370 Gene3D - 1034 1184 - -
Dere04g1862 1370 Pfam Agenet domain 27 100 IPR008395 -
Dere04g1862 1370 Pfam PHD-finger 831 873 IPR019787 -
Dere04g1862 1370 SMART ring_2 832 871 IPR001841 -
Dere04g1862 1370 SMART ring_2 873 917 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1862 Dere-ChrDere04 21327607 21338439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1862 32 248 PHD Transcription Factor Family AT5G58610 46.637 3.39e-59 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere04g1862 Agenet 6.9e-16 CL0049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1862 04 21327607 21338439 Dere04g1862 04 21327607 21338439 ECH