Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1851 ATGTCAGAGAAGGAAGGAGCCGGTGTGGCAGCTAGATGGGAATGTGGGATCGTCCTTTTGACCCAACCCATAAAGACAAGGAGGCGGAAAAGTCTCCCTCTTCCTGTTTCTCTCTCTTTCAAAAGCTTGGAAGCGTTGAAGTTAAAAGCAGAAGGAAAAACTAGAGGCTGGGTTGCTATTCTTGCTTGGGGGGTGTGCTTTTATCATCACAAGGTCCTGTGGTCGCTAGAAAGCTCGATTTCCATGTGCAGTGGTTCTAAGAGGAAACCTTCTCAAGCAGGTTTTGTTATGGAGGGTGAATATGGGAAACAAGAAGGGCTGCATAATAGAACTACTGCTTTGCTTGAACTCTCAGCCTCTGATGATTTAATGCTCTTCAAAGATGCAGTTGAGCAGGAGGGTCTTGATGTTGACGAGGTGGGTTTGTGGTACGGAAGGAAAATTGGCTTAAAGAAATTGAGTTATGAAGAGAGGACTCCCCTCATGGTTGCTGCTATGTTTGGAAGCAAGGGCATATTAAGTTATATACTTGGAACAGGTCGTGTTGATGTTAATCGGGCTTGTGGATCAGATGGGGCTACTGCCCTTCATTGTGCCGTTGCTGGGGGTTCAGCTTCAACCGCTGAGGTTGTCAAGCTTTTGCTTGATGCATGTGCTGATGTAAGTGCTGTTGATGCAAATGGTAAGCGACCTTGTGACTTGATTGTTTTTGGGGTTAATTCCATCTTCAATTCAAGGAAAAGGATACTACAAGCTCTACTGAAAGGTACAGGTGTTATTGATGAGGCAAATCTCTCATTTGAGGATACCATTAGCCAAGTGGAGGAACAGCAACAGCAAGATATGACTGCATCTCGTGTTTCAAAAGATCGGTCTGAGAAGAAAGATTATCCTGTTGATCTTTCTCTCCCAGACATAAAGAGTGGGATCTATGGTACTGATGAGTTTAGGATGTACACATTCAAAGTGAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCTAGGCGGCGGGATCCCAGAAAATATCATTATAGCTGTGTCCCTTGCCCGGAGTTTCGGAAGGGATCATGCAGCAAGGGGGATGCCTGTGAGTATGCACATGGTATATTTGAGTGCTGGCTTCACCCTGCACAGTATCGGACGCGGCTTTGCAAGGATGAGAGTGGGTGCACCAGAAGAGTTTGCTTCTTTGCTCATAAGCCTGAGGACCTTCGCCCCTTGTATGCTTCCACTGGTTCAGCTATACCTTCTCCCAGATCATTTTCAACAAATTCTTGTTCATTGGATATGGGATCACTTAGCCCTCTCTCGCTAGGTTCTCCATCAGTCATGATACCCCCAGCTTCAACACCCCCTCTGACTCCTTCTGGTGCTTCTTCTCCTGTGGGTGGATCCATGTGGCAGACCCAGTCTAATGGGGGAGTCCCAACCCTGCAACTGCCAAGAAGCAGATTGAAAACTGCTTCAAATGCTAGGGATATCGATTTAGAAATCGAATTGCTTGGACTTGAAAATCATAGACGTAGGCAGCAGCTGATGATGGATGAGATTTCTGGTCTTTCCTCACCATCCAGCTGGAAGAATTCCATGCCTAATAATCCATCTTTTCCCGTCTCTTTGGGTGATCAAGCTGGGGAGCTGAATAGGCTTGTAGGAATGACGCCTACTAACCTTGAAGACATTTTTGGGTCACTTGATTCATCAGTTTTTCCTAAATTACAGGGAATCTCACTAGACGCTGTAGGACCACAGTTGCAATCTCCAACAGGAATCCAGGCTCTTCATAATGCAAACTTGCACCTGCGAAGCTATTCTTCTGGTCTTTCCAATTCAAATCTGATAGGGTCACCATCTTCTGGGAATGATCTATCTGGGTCAACAGCAACCACAATGGCCTTGAATCCAAGACTTGCTGCCTTTTCTAAGCGGAGCCAGAGCTTCATTGAGCGCAGTGTGGTGAACCGTCATCCAGAGCTTTCCTCTCCAATTTCTGCAGCAACAATGCCTTCTGCCTTATCAGATTGGGGCTCCCCTGATGGAAAGTTGGACTGGGCCATCCATGGAGAAGAGCTGAATAAGCTGAAGAAATCTGCTTCTTTTGGATTTCGAAGCAGTAGTAGTACCCGAGTGCCAGCAAATGTTGATGAACCAGATGTTTCTTGGGTTCATTCACTAGTGAAGGATGCTACACCGCCAGAATCTGGTCAATTTAGTAGTGAAGAGCAGCAACAGCAACTGATGCAATGCCATCTCAACAATGGAACAGAAGTAGTTCCAGCTTGGCTTGAGCAATTCAACGTAGAGCAAGAGCAAATGGTGGCGTGA 2361 0.4621 MSEKEGAGVAARWECGIVLLTQPIKTRRRKSLPLPVSLSFKSLEALKLKAEGKTRGWVAILAWGVCFYHHKVLWSLESSISMCSGSKRKPSQAGFVMEGEYGKQEGLHNRTTALLELSASDDLMLFKDAVEQEGLDVDEVGLWYGRKIGLKKLSYEERTPLMVAAMFGSKGILSYILGTGRVDVNRACGSDGATALHCAVAGGSASTAEVVKLLLDACADVSAVDANGKRPCDLIVFGVNSIFNSRKRILQALLKGTGVIDEANLSFEDTISQVEEQQQQDMTASRVSKDRSEKKDYPVDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEDLRPLYASTGSAIPSPRSFSTNSCSLDMGSLSPLSLGSPSVMIPPASTPPLTPSGASSPVGGSMWQTQSNGGVPTLQLPRSRLKTASNARDIDLEIELLGLENHRRRQQLMMDEISGLSSPSSWKNSMPNNPSFPVSLGDQAGELNRLVGMTPTNLEDIFGSLDSSVFPKLQGISLDAVGPQLQSPTGIQALHNANLHLRSYSSGLSNSNLIGSPSSGNDLSGSTATTMALNPRLAAFSKRSQSFIERSVVNRHPELSSPISAATMPSALSDWGSPDGKLDWAIHGEELNKLKKSASFGFRSSSSTRVPANVDEPDVSWVHSLVKDATPPESGQFSSEEQQQQLMQCHLNNGTEVVPAWLEQFNVEQEQMVA 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1851 786 MobiDBLite consensus disorder prediction 274 295 - -
Dere04g1851 786 Gene3D - 356 418 - -
Dere04g1851 786 SMART ANK_2a 156 186 IPR002110 GO:0005515
Dere04g1851 786 SMART ANK_2a 191 223 IPR002110 GO:0005515
Dere04g1851 786 Pfam Ankyrin repeats (3 copies) 149 223 IPR002110 GO:0005515
Dere04g1851 786 ProSiteProfiles Ankyrin repeat region circular profile. 191 225 - -
Dere04g1851 786 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 360 380 IPR000571 GO:0046872
Dere04g1851 786 SUPERFAMILY Ankyrin repeat 109 240 IPR036770 -
Dere04g1851 786 ProSiteProfiles Ankyrin repeat profile. 191 226 IPR002110 GO:0005515
Dere04g1851 786 Gene3D - 97 293 IPR036770 -
Dere04g1851 786 Coils Coil 260 280 - -
Dere04g1851 786 FunFam Zinc finger CCCH domain-containing protein 66 313 381 - -
Dere04g1851 786 PANTHER UNKEMPT FAMILY MEMBER 116 740 IPR045234 -
Dere04g1851 786 SMART c3hfinal6 355 381 IPR000571 GO:0046872
Dere04g1851 786 SMART c3hfinal6 390 413 IPR000571 GO:0046872
Dere04g1851 786 ProSiteProfiles Zinc finger C3H1-type profile. 360 382 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1851 Dere-ChrDere04 21200868 21204753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1851 112 781 C2H2 Transcription Factor Family AT5G12850 38.710 3.99e-141 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere04g1851 Ank_2 6.1e-07 CL0465