Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1839 ATGCATACAGTGCGGAAGCAGAGGAAAGGAATGCTGAGTGGACATGAAGGAAGAGAAGTCAAATTTTGGCATGAAGCTATAACTCTTCAACATGCTCTGACTTGGTCAAGGGACATTCTTATAGCTTCTCCCAGTCTCCCTTGCAGAACTTGTCGGCGATACAGTGTGTGTGGAAGAAGCAAAGAGATGGCGAAAACGACGTCGTTGTTGCTATGGACACTGGTCATCTTCGGCACTCTCGCTCTCATCCAGGCGAAGAAGTCGAAGGAGGATTTGAAAGAGGTGACACACAAGGTTTATTTTGACATCGAGATTGATGGGAATCCTGCTGGTCGTATCGTGATGGGTCTTTTTGGGAAGACAGTTCCCAAAACTGCAGAAAACTTTCGAGCTCTTTGCACAGGGGAGAAAGGAACTAGAAAAAGTGGAAAGCTCCTCCATTACAAGGGTAGCACATTCCACAGGATTATTCCTAGCTTTATGATCCAAGGAGGTGATTTTACCCACGGCAATGGAATGGGCGGGGAATCAATCTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGCTAAAGCATACGGGACCAGGACTTATGTCAATGGCAAACGCTGGTCCTGATACCAATGGATCACAATTCTTCATTACGACTGTGACAACTAACTGGTTGGATGGGAGGCACGTTGTGTTTGGAAAAGTACTTTCTGGAATGGATGTGGTGTACAAGATTGAGGCTGAGGGAAGGCAAAATGGAACTCCTAAGAGCAAGGTCGTCATTGCTGATAGCGGTGAACTCCCTTCATAA 801 0.4607 MHTVRKQRKGMLSGHEGREVKFWHEAITLQHALTWSRDILIASPSLPCRTCRRYSVCGRSKEMAKTTSLLLWTLVIFGTLALIQAKKSKEDLKEVTHKVYFDIEIDGNPAGRIVMGLFGKTVPKTAENFRALCTGEKGTRKSGKLLHYKGSTFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGLMSMANAGPDTNGSQFFITTVTTNWLDGRHVVFGKVLSGMDVVYKIEAEGRQNGTPKSKVVIADSGELPS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1839 266 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 100 260 IPR002130 GO:0000413|GO:0003755
Dere04g1839 266 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 263 IPR002130 GO:0000413|GO:0003755
Dere04g1839 266 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 148 165 IPR020892 GO:0003755|GO:0006457
Dere04g1839 266 CDD cyclophilin_ABH_like 97 262 - -
Dere04g1839 266 FunFam Peptidyl-prolyl cis-trans isomerase 92 265 - -
Dere04g1839 266 Gene3D - 84 266 IPR029000 -
Dere04g1839 266 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 98 264 - -
Dere04g1839 266 SUPERFAMILY Cyclophilin-like 95 264 IPR029000 -
Dere04g1839 266 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 196 211 IPR002130 GO:0000413|GO:0003755
Dere04g1839 266 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 211 223 IPR002130 GO:0000413|GO:0003755
Dere04g1839 266 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 165 IPR002130 GO:0000413|GO:0003755
Dere04g1839 266 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 224 239 IPR002130 GO:0000413|GO:0003755
Dere04g1839 266 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1839 Dere-ChrDere04 21031599 21035043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1839 111 243 U-box Gene Family AT5G67530 46.269 3.70e-27 108