Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1828 ATGGGAAAGATAGCGTTTTATGAATCTCTCAAAGCTCTGGAGGCTGATATTCACCATGCCAATACCCTGCTATTAGGATATCCCAGGGATAAAGATGAAGCATGCTTTCAGATGAGACTATCCTACAGTCCAGCAGCCACCTATTTTCTTTTTCTTGTTCAGTGGACGGATTACCACCTGGCTGGTGCTCTGGGTTTGCTGAGAGTTCTAATCTATATGACCTATGGAGATGGGAAGAACACCATGTCAATATATGAAAGGAAAGCGAGCATTAAAGAATTTAAATCGGTGATCTTTCCTGCTTTATTGCAACTTCAGAATGGCATCACAGCTTTGGAGGAAAGAAAACAGAAAGAAGTATATGCTGCTAGATATAAAAGGAAGGAAAAACAATCTAATATTGACATGGAAAGAGAGGAGGAATGTGGAATTTGCATGGAGGTGAAGCCAAAAGTTGTGCTGCCTAATTGCTGCCATTGTATGTGTTTGAAGTGCTTCAGAGATTGGCGTGTGAGATCCGCGTCTTGCCCCTTTTGCCGGGATAATCTAAGGAGGGTCAACTCGGGTGACCTTTGGAATTACACAGATGATAGTGAAATTGTCGATTCTGAGATGATTTTCAAAGAAAATCGTAAGAGGCTGCTTTTGTACATAGAGAAGTTGCCTATTGTTGATCCAGACCTCAGCTATATGGCCTATGAACCGTGTGGGTGGTGA 717 0.4212 MGKIAFYESLKALEADIHHANTLLLGYPRDKDEACFQMRLSYSPAATYFLFLVQWTDYHLAGALGLLRVLIYMTYGDGKNTMSIYERKASIKEFKSVIFPALLQLQNGITALEERKQKEVYAARYKRKEKQSNIDMEREEECGICMEVKPKVVLPNCCHCMCLKCFRDWRVRSASCPFCRDNLRRVNSGDLWNYTDDSEIVDSEMIFKENRKRLLLYIEKLPIVDPDLSYMAYEPCGW 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1828 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 190 IPR013083 -
Dere04g1828 238 PANTHER RING FINGER PROTEIN 41, 151 6 229 - -
Dere04g1828 238 FunFam RING/U-box superfamily protein 123 189 - -
Dere04g1828 238 Pfam Zinc finger, C3HC4 type (RING finger) 139 185 - -
Dere04g1828 238 ProSiteProfiles Zinc finger RING-type profile. 142 180 IPR001841 -
Dere04g1828 238 SUPERFAMILY RING/U-box 131 184 - -
Dere04g1828 238 SMART ring_2 142 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1828 Dere-ChrDere04 20871643 20874897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1828 104 198 C3H Transcription Factor Family AT5G01960 30.526 2.95e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1828 04 20871643 20874897 Dere04g1828 04 20871643 20874897 ECH