Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1822 ATGACTAACCCTCCCATTCCCATGCATCCATCTTCTTCTTCTTCAGGCCCTCCTTTGACAACCATAGACGGCTTCTTCTGGGACAAACTCACCCAAATCTCTGATGGGTTTCCGTGGTCTGATGATACAGAAGACATCCCTACACTGAACAATAAAGTACAAGCAGTAGGGATGATCCCAAATGGTAATACAGTGATGGCGGGACGGAGAGGTAAGAAAGGGTCTTCTTCCTCATTGATCAAACAGAAAGGTAGTTGGAGTGAGGAAGAAGAGAAAATATTAGTAGAATCACATGCAAAGATAGGAAATAAGTGGGCAGAAATAGCAAAGAGCATTCCAGGAAGAACAGAGAATGCAATAAAGAACTACTGGAATGCCACCATGAGAAAGCTGGACAGAAAGAGAAAGCGAGAGAGTACTCATCAAAGCTCAAAAAATAATGGAAAAAAGCCGCCTTCCTCTTCTATTCTTGAGGACTACATCGAAAGCAAGACTCTCCCAAATAACCCCACCATTGATATTAAGGAACCACCTAAAATCCAGTTGAAACCAGTGATATTTTATCAAAAACCTTCTCAGGAATCAACTGTAGATTTTAATCAAACGGATGGTGGGCATGAGGGTATTCTCCCTCAACAATGTACTGCTAGTCATCACCCCTCTGATTTATATCTAGCTCAACTGTTAAATGGGGGGGCTGGTTGGGATTGTGGAACAAATGGAAATTTGAACATGTGCTTGCAAGTGGGGAATGATCAGCAAGCTTGGAATGAAGGAAAGCCTGATGTGGATATGGATTTAATTGAGTGGGTTTCTTCTTTCAGTTTTCTACTACCGGAGGCCTCTAATTACTTTTGTTGCTTTAATTGA 870 0.4172 MTNPPIPMHPSSSSSGPPLTTIDGFFWDKLTQISDGFPWSDDTEDIPTLNNKVQAVGMIPNGNTVMAGRRGKKGSSSSLIKQKGSWSEEEEKILVESHAKIGNKWAEIAKSIPGRTENAIKNYWNATMRKLDRKRKRESTHQSSKNNGKKPPSSSILEDYIESKTLPNNPTIDIKEPPKIQLKPVIFYQKPSQESTVDFNQTDGGHEGILPQQCTASHHPSDLYLAQLLNGGAGWDCGTNGNLNMCLQVGNDQQAWNEGKPDVDMDLIEWVSSFSFLLPEASNYFCCFN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1822 289 MobiDBLite consensus disorder prediction 130 144 - -
Dere04g1822 289 ProSiteProfiles Myb-like domain profile. 82 128 IPR001005 -
Dere04g1822 289 CDD SANT 85 125 IPR001005 -
Dere04g1822 289 Pfam Myb-like DNA-binding domain 83 125 IPR001005 -
Dere04g1822 289 Gene3D - 85 154 - -
Dere04g1822 289 MobiDBLite consensus disorder prediction 130 156 - -
Dere04g1822 289 PANTHER MYB PROTEIN-RELATED 80 151 - -
Dere04g1822 289 SUPERFAMILY Homeodomain-like 83 135 IPR009057 -
Dere04g1822 289 SMART sant 82 130 IPR001005 -
Dere04g1822 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 132 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1822 Dere-ChrDere04 20820159 20822282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1822 82 163 MYB Transcription Factor Family AT5G58850 57.647 3.59e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere04g1822 Myb_DNA-binding 1.8e-15 CL0123