Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1820 ATGGCAAACATTGCTAGTTTCTTGGGCAAGTTCGTCTCTCTTTTCATCCTCCTCGTCCACCTCGGCTGCTTCATCTTCTCCACCGCCGGCTGCGGCGCAGACGGAGGAGAACAAGATACCCAGAAGCTGCCTTCGAAGAAACGCAAGGTCTCCCCTGTTTCGCACTCGCAACAGCCTTCTCCTTCTCATCCCAAGTTCAAAACCCGTAAGGCTCTTTCTTCTTCTTGGACTTATATCAAACACCTGTTCTCCAGCAAATCCTGCAAAAACAGCGACGCTGCCCAGGGGTCACCGCAATCCTCCACCTCCACCGCCACTTCCGCCGCGCTACCTTCTTTAACCTCGTCCAGATCCTCCCAGCAGTCGCTTGTCTCTCTGGCGCAACCCGAATCGCATTCACTTGATCCTCCGGGGAAAAAACAGTCGGGGTCCTGTCCAGAATCCGATATCGCCGCCGATAACAACCACTTCTTCCCCCTCCGCAACGACATCTTCCCCTGCACCGCCTGTGGCGAGATTTTCCAGAAACCCCAAGCCCTCGAACAGCACCAATCGCTCAAACACGCGGTGTCGGAGCTGGTGGAGACGGACGCGGGTCACAACATAGTGCGGATAATATTCAAGTCGGGTTGGACGAACACCCAGAAATGCCCCAGAATAAGTCGGATCCTAAAGATCCATAACAGCCCGAAGATCCTCTCCAAGTTTGAAGAATACAGAGAGACGGTGAAGGCCAAGGCTGCCCGAAACGGCGCCGCAAAGAAGCGCGACGAGAGGTGCATAGCCGACGGCAACGAGCTCATGAGATTCCACTGTTCCACGTTCCTCTGCGACTTGGGACTCAACGGGAATTCCGGCATTTGTGGCCAGCAATACTGTAATATCTGCGGGATCATCAAATCGGGGTTCTCACCCAAGTTGGACGGAATCTCCACGCTATCGACGAGCTGGAGGGCACACATGGCGATCCCGGATGAGGTGGAGGAGGAGTTCAAGTTCATGAACGTGAAGCGGGCCATGCTGGTATGCCGGGTCATTGCTGGTCGGGTCGGGTGCGATTCGGACGAGGCCGACAAACAGGACGGGGTGTATGATGAGCGAAATCCAGCGGTGGTCTTGGCTTGTGATTTTAATCGTGTGGTGATGAAGGTCACGAGTGAGAAGGCAATGAAGAGTGTGAATTGCTGA 1188 0.5471 MANIASFLGKFVSLFILLVHLGCFIFSTAGCGADGGEQDTQKLPSKKRKVSPVSHSQQPSPSHPKFKTRKALSSSWTYIKHLFSSKSCKNSDAAQGSPQSSTSTATSAALPSLTSSRSSQQSLVSLAQPESHSLDPPGKKQSGSCPESDIAADNNHFFPLRNDIFPCTACGEIFQKPQALEQHQSLKHAVSELVETDAGHNIVRIIFKSGWTNTQKCPRISRILKIHNSPKILSKFEEYRETVKAKAARNGAAKKRDERCIADGNELMRFHCSTFLCDLGLNGNSGICGQQYCNICGIIKSGFSPKLDGISTLSTSWRAHMAIPDEVEEEFKFMNVKRAMLVCRVIAGRVGCDSDEADKQDGVYDERNPAVVLACDFNRVVMKVTSEKAMKSVNC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1820 395 Gene3D - 188 387 - -
Dere04g1820 395 MobiDBLite consensus disorder prediction 50 68 - -
Dere04g1820 395 SUPERFAMILY ADP-ribosylation 190 350 - -
Dere04g1820 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 193 IPR013087 -
Dere04g1820 395 ProSitePatterns Zinc finger C2H2 type domain signature. 167 188 IPR013087 -
Dere04g1820 395 MobiDBLite consensus disorder prediction 88 148 - -
Dere04g1820 395 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 74 365 - -
Dere04g1820 395 MobiDBLite consensus disorder prediction 36 68 - -
Dere04g1820 395 MobiDBLite consensus disorder prediction 88 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1820 Dere-ChrDere04 20804790 20806189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1820 76 352 C2H2 Transcription Factor Family AT2G29660 56.584 1.29e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g1820 None None None