Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1811 ATGATGCGGGAAACTGGAATCTTCTCTCCTGCGCAGCAAATCACCAATTCTAACACCAATTGGATTGGTGATGATATTAGAAACCCCAAATGGACGCGTGTTGAGAATAAACTCTTCGAAAATGCTCTTGCACTATACGACAAGGATACGCCAGATCGGTGGCAGAGAGTGGCCGCAATGATCCCAGGGAAGACGGTCGGTGACGTGATGAAGCAGTACAAAGAGCTCGAAGATGATGTTTCTAATATAGAAGCTGGTCTGGTCTCAGTTCCAGACTATTACAGTTCCACTTCTTCCTTCCCTTTCACCATAGACAATTGGGTGAACTGTTCTTTTGCGTTGGATCCCTCACAAGGACTCCATGGAAAGAGATCCTCCTCAGGGAGACCCCCTGAGCACGAAAAGAAGAAAGGAGTTCCTTGGACTGAAGAGGAGCACAAACAGTTTCTGCGGGGGCTGAAGGAGCATGGGAAGGGAGATTGGAGGAGCATATCTAGAAATTTCGTGAAAACTCGAACACCAACCCAGGTGGCTAGCCATGCCCAGAAGTTCTTCATAAGGCAACTCTCAGGAGGGAAAGACAAGAGGAGAGCAAGCATCCATGACATAACCACAGTGAACCTCACAGAAACCACAAACACAAGAACAGCACTAACAACATCAACAATATCAACACCTTCTACTTCACAAGGCACTACCCGAAGATCCTCTTCACCGCCACAGAATCCCATGAGCGTCATGCTCTCACAGTCACAACAGCAGCAAAATTCTACTGTTCCTACGGTGCAGTTTCAGTGGAACCACCAGCCAATGGCTGCTCTAAGCGATCCTGCACATGAGAACTTGTTCATGTCTGATTCTTATGGGGTAGGTGGTGGAGAGTATGACTCCTCCTATGGGTTTGGAAGTGCTCTTATTCATCATGAATCTTCCTACTTAGGGCCTCAAACTCAAAACATGATCTTCCAAATGCCATGA 978 0.4703 MMRETGIFSPAQQITNSNTNWIGDDIRNPKWTRVENKLFENALALYDKDTPDRWQRVAAMIPGKTVGDVMKQYKELEDDVSNIEAGLVSVPDYYSSTSSFPFTIDNWVNCSFALDPSQGLHGKRSSSGRPPEHEKKKGVPWTEEEHKQFLRGLKEHGKGDWRSISRNFVKTRTPTQVASHAQKFFIRQLSGGKDKRRASIHDITTVNLTETTNTRTALTTSTISTPSTSQGTTRRSSSPPQNPMSVMLSQSQQQQNSTVPTVQFQWNHQPMAALSDPAHENLFMSDSYGVGGGEYDSSYGFGSALIHHESSYLGPQTQNMIFQMP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1811 325 ProSiteProfiles SANT domain profile. 141 189 IPR017884 -
Dere04g1811 325 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
Dere04g1811 325 CDD SANT 30 76 IPR001005 -
Dere04g1811 325 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Dere04g1811 325 MobiDBLite consensus disorder prediction 126 142 - -
Dere04g1811 325 Pfam Myb-like DNA-binding domain 140 183 IPR001005 -
Dere04g1811 325 Gene3D - 139 189 - -
Dere04g1811 325 FunFam transcription factor MYB1R1 139 190 - -
Dere04g1811 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 136 188 IPR006447 GO:0003677
Dere04g1811 325 MobiDBLite consensus disorder prediction 118 142 - -
Dere04g1811 325 SMART sant 27 79 IPR001005 -
Dere04g1811 325 SMART sant 137 187 IPR001005 -
Dere04g1811 325 MobiDBLite consensus disorder prediction 215 260 - -
Dere04g1811 325 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 258 IPR043363 -
Dere04g1811 325 SUPERFAMILY Homeodomain-like 135 188 IPR009057 -
Dere04g1811 325 Gene3D - 26 90 - -
Dere04g1811 325 FunFam Transcription factor SRM1 24 90 - -
Dere04g1811 325 CDD SANT 140 185 IPR001005 -
Dere04g1811 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 189 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1811 Dere-ChrDere04 20687076 20688236 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere04g1811 Myb_DNA-binding 5.5e-13 CL0123