LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1803	ATGAAGAACACCCCAGAACCCCATTTGTTTCATTCAAGGCAAAGTAGTCAGAATGGAGGAAATGATACAAAGAAGCATAACCATAGGACTCATCCTTCCCTGAAATATCTTAAATCTGTTGTCAAAAGTTTTGCAGGTGTTCTTGCATTATTTCGCTCTGAAAAGAGAAAATCAGCTGCAAAAGTTGTTGGAAGTGATGATAGAAGGAATACAAGTAGGGTCAGATTGGTATCATCATTTTCAACTGATGTATCGTCTGAGAGTAACAAGAAGAATTCGTCAAAATCGAAGTTTTCTTACTCCTACGCATCTTCTAGCACCGCAAGTGGACAACTTGGAATGGGCAACTTCTCCTTCGAAGAAATTTACAAAGCAACAGGAAAATTTTCTGCAGATAATCAGATTGGGGAAGGTGGGTTTGGAACTGTGTATAAGGGGAAGCTCAATGATGGGTCTCTTGTTGCCATTAAGTGTGCGAGGAAGAATGTGCAAGACAAGAACTTAACTGAGTTCAAGAATGAGATACACACCTTGTCAAAAATTGAGCATCTGAATCTTGTGAGGCTATATGGATATTTGGAGCATCAAGAGGAGAGGATAATTGTTATTGAATATGTTGGTAATGGGACACTTCGGGAGCATCTAGACGGTACAAGGGGAAATGGACTTGAAATCGGTGAACGCCTAGACATAGCAATCGATGTAGCTCATGCAATCACCTACCTCCATATGTACACAGATCGTCCAATAATCCATAGAGACATCAAAGCATCCAACATCTTAATCACAGAGAAACTGAGGGCCAAAGTTGCAGACTTTGGATTTGCTCGTTTGGCTTCAGAGGATCCTGCAGCAACCCATATCTCTACTCAAATTAAAGGAACAGCTGGCTACTTGGATCCTGAGTATCTCCGAACATATCAACTCACTGACAAGAGCGATGTTTATTCATTCGGCGTGTTGCTGGTAGAAATGATGACAGGGCGACATCCATTAGAACCTAAGAGACCTCTCAGTGAGAGAGTGACCATCAGATGGGCAATGCAGATGCTGAAACAAGGAGATGCTGTCATCGCCATGGACCCGTGGCTGCGGAGAAGTCCAGCTTCGAACATGGCAGTGGAGAAGGTCTTGAAGCTAGCCATCCAATGCCTTGCACCTCTGAGACAATCTCGGCCTTCCATGAAGAGTTGTGCAGAGGTTCTATGGGGAATCCGAAAAGAGTTTAAAGATGAAGCCTTGTCTCATGTTCCTCCCCTTGCTTCTCACCGTTCTGCAGATTTTCCTATCAGTGATGCAAGGAAGAATAGGCATATGTCATCTGATGTTGTAGATGATGACAACTATAAATTCGTCTCTGCATAA	1365	0.4286	MKNTPEPHLFHSRQSSQNGGNDTKKHNHRTHPSLKYLKSVVKSFAGVLALFRSEKRKSAAKVVGSDDRRNTSRVRLVSSFSTDVSSESNKKNSSKSKFSYSYASSSTASGQLGMGNFSFEEIYKATGKFSADNQIGEGGFGTVYKGKLNDGSLVAIKCARKNVQDKNLTEFKNEIHTLSKIEHLNLVRLYGYLEHQEERIIVIEYVGNGTLREHLDGTRGNGLEIGERLDIAIDVAHAITYLHMYTDRPIIHRDIKASNILITEKLRAKVADFGFARLASEDPAATHISTQIKGTAGYLDPEYLRTYQLTDKSDVYSFGVLLVEMMTGRHPLEPKRPLSERVTIRWAMQMLKQGDAVIAMDPWLRRSPASNMAVEKVLKLAIQCLAPLRQSRPSMKSCAEVLWGIRKEFKDEALSHVPPLASHRSADFPISDARKNRHMSSDVVDDDNYKFVSA	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1803	454	ProSiteProfiles	Protein kinase domain profile.	129	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g1803	454	Gene3D	Transferase(Phosphotransferase) domain 1	206	418	-	-
	Dere04g1803	454	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	50	423	IPR044652	GO:0004672
	Dere04g1803	454	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	250	262	IPR008271	GO:0004672\|GO:0006468
	Dere04g1803	454	MobiDBLite	consensus disorder prediction	1	29	-	-
	Dere04g1803	454	ProSitePatterns	Protein kinases ATP-binding region signature.	135	161	IPR017441	GO:0005524
	Dere04g1803	454	SMART	serkin_6	129	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g1803	454	SUPERFAMILY	Protein kinase-like (PK-like)	110	405	IPR011009	-
	Dere04g1803	454	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	206	416	-	-
	Dere04g1803	454	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 1	93	205	-	-
	Dere04g1803	454	Gene3D	Phosphorylase Kinase; domain 1	85	205	-	-
	Dere04g1803	454	Pfam	Protein kinase domain	131	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1803	Dere-ChrDere04	20634111	20637534	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1803	68	406	Receptor kinase-like Gene Family	AT4G39110	41.056	1.53e-68	232

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IV	Dere04g1803		Pkinase	1.3e-52	CL0016