Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1799 ATGATGTCGTACTCCAGGAGATCAAGGTATTCTCGATCTCCTTCCCCATACAATCGTTATGGTAGGTCTGTCTCCAGGTCTCTGTCAAGGTCAAGATCTAGAAGCTTTTCAAGGAGCCTATCAAGAGATGCAGAGAATCCTGGTAACAATTTGTATGTGACAGGCTTGTCTCCTCGGATAACCAAGAGAGAATTGGAGAAGCATTTTGCTACTGAGGGAAAAGTGATTGATGTTCATCTAGTTGTTGATCCATGGACAAGAGAATCACGAGGGTTTGGATTCGTGACGATGGAAACTGTTGAGGAGGCTGACCGGTGCGTTAAGTATCTGAATCGCTCTGTGCTTGAAGGTCGTGTCATCACAGTAGAGAAGGCTAGAAGACGACGGGGTCGTACTCCAACACCTGGGAGGTATCTTGGGCTGAGGACTGTTCGTGTGCGTCGCCGTTCTCCGAGCTACTCTCCTCGCCGCTCTCCTAGTTATTCTCCTTACAGAAGAAGCTATAGTCGTTCACCATATTCCTCAGATCGCAGTAGGAGTCGTTCCTACTCTCCTTTCTATAGCCTGCGGAGGTCCTATTCTCCTTATCACGGCCGAAGGAGGTCCTACTCTCCATACTATAGTCGGCGGAGGTCCAATTCACCTTATGATCGACGCAGGTCATACTCTCGGTCCCGCTCCCCTTACAGCAGGTCACCTGTCAGCAGGCGTGACAGATCATACTCTCCTTATGACTCAAGGTACAACTCACCTGATGACCGCTACTATAGAAGGCATCGTTATAGGTCCATTTCTCGAAGCGTCTCGCCAAGGCCAGGAAGAAGTTCAAGGAGGAGGTATTCGCCAAGTGTCTCTCCTGTGCGGAGGAGCTCAAGAAGGAGCTACTCGCGAAGTGTTTCCCCTAGGCCACGGAGGAGTTCACGAAGGAGCTATTCTCGCAGCATCTCTCCAAGACCCAGAAGCAGTAAGAGAAGCGGTGGTTCTTCTAAACGTGGGCATACACCTGTTAGTGTTAGAAGCTACTCAAGAAGTCGAAGTGTGAGTGCAAGTTCAAGATCATTATCTAGGTCTTTTACTCCTAGATCAGCATCTCCCTGA 1098 0.4927 MMSYSRRSRYSRSPSPYNRYGRSVSRSLSRSRSRSFSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVRVRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPFYSLRRSYSPYHGRRRSYSPYYSRRRSNSPYDRRRSYSRSRSPYSRSPVSRRDRSYSPYDSRYNSPDDRYYRRHRYRSISRSVSPRPGRSSRRRYSPSVSPVRRSSRRSYSRSVSPRPRRSSRRSYSRSISPRPRSSKRSGGSSKRGHTPVSVRSYSRSRSVSASSRSLSRSFTPRSASP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1799 365 CDD RRM_SF 51 123 - -
Dere04g1799 365 SUPERFAMILY RNA-binding domain, RBD 31 140 IPR035979 GO:0003676
Dere04g1799 365 MobiDBLite consensus disorder prediction 195 365 - -
Dere04g1799 365 MobiDBLite consensus disorder prediction 1 51 - -
Dere04g1799 365 MobiDBLite consensus disorder prediction 312 365 - -
Dere04g1799 365 FunFam Serine/arginine-rich splicing factor SR45a 3 133 - -
Dere04g1799 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Dere04g1799 365 MobiDBLite consensus disorder prediction 126 182 - -
Dere04g1799 365 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 35 270 - -
Dere04g1799 365 MobiDBLite consensus disorder prediction 153 182 - -
Dere04g1799 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Dere04g1799 365 MobiDBLite consensus disorder prediction 268 297 - -
Dere04g1799 365 Gene3D - 3 133 IPR012677 -
Dere04g1799 365 SMART rrm1_1 50 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1799 Dere-ChrDere04 20607856 20610541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1799 50 131 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 2.31e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1799 04 20607856 20610541 Dere04g1799 04 20607856 20610541 ECH