Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1778 ATGCAAAAGGGACACGTGGCTGACGTTGCTGTCAAAGTTCGTATGGTGTGGTCCCCACCTCAAGGCCACGCGTTTCCCGGTTTCCTGCTCGTCAAGTGCGTGTCACGTGGGCCAGAAATTTTGTTTCTTTTCTTTGGACTTTTCCTTCGTCAGTCATCACTCTACCGGAAACCTGATTTCGCCGGTTCCCTCTGCCCCGCCTTCTCGGCTCCACAGCGTCGGAGGGGATACCAGCACAGCCGGTTGCCCGCGCTCAACACGCTCCACGTGTCCCCGTCATTAACCCAGGGTTTTTTTTTTCTTTGGTTTTCCCGGGGATCTGAAAATATGCAGTCCAAGTCTGAAACTGCAAATCGACTGCGGACTGATCAACATTCCTTTCCACCTAACACTGTTTATTCTGAGCCTTGGTGGCGTGGTTATAATCCCATGTCCCAAGCAATGGCTGGGGCAAATGCTTCCAATTCATCCTCACTTGAATGTCCTAATGGTGATTCTGAATCCAATGATGGCCAATCCTTGTCTAATAGTGGGTTGAATGAGGAAGATGATGATGCAACTAAGGAATCACCAGCTACTGCTCCTAATCAATCAGGAAATTACGTTCAAGAACACCAAGGGATGCAGCACCCTTCGTCATCTGCACCTTCCATGCGAGATGAATGCTTTTCACAGACCCCACAGCTTGAACTTGTTGGTCATTCAATCGCATGTGCTTCAAATCCTTATCAGGATCCATATTATGGGGGAATGATGGCAGCTTATGGACCCCATCAGCTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCGCTGCCACTTGAGATGGCGCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAGGCAATTCTCAGGCGTAGACAAGCTCGTGCAAAGGCAGAGCTTGAAAAGAAGCTGATAAAAGTTAGAAAGCCTTATCTTCATGAATCTCGGCACCAGCATGCTATGAGAAGGGCTAGGGGTACTGGGGGACGTTTTGCAAAGAAAAGTGATGCTGCTGAGGCCTCAAACCACTCAGGCAAGGAAAAGGATATGGTATCTGGTCCAGTCATATCTTCACAATCAATTAGTTCATCTGGTTCGGAGCCTTTACCCTCTGAGTCTGCTGAAACCTGGAACTCCCCCAATGTGCAGCAAGATGCTAGAGGATATAAAGTTTCTGACCGATATGAAGCGCACAACTATGCGAATAGTAGTGGCCCATACCATAATCATAGTGGCTTGCAATCTTCCACTTATCATTTGCACTCAGGCGAAAGACTGGAGGAAGGGGACTGCTCAGGGCAACAACGGGGGAGTATCTCTTCTGAACACACTTCACAGAGGCGTCTCGCAATTCAGTAG 1377 0.4844 MQKGHVADVAVKVRMVWSPPQGHAFPGFLLVKCVSRGPEILFLFFGLFLRQSSLYRKPDFAGSLCPAFSAPQRRRGYQHSRLPALNTLHVSPSLTQGFFFLWFSRGSENMQSKSETANRLRTDQHSFPPNTVYSEPWWRGYNPMSQAMAGANASNSSSLECPNGDSESNDGQSLSNSGLNEEDDDATKESPATAPNQSGNYVQEHQGMQHPSSSAPSMRDECFSQTPQLELVGHSIACASNPYQDPYYGGMMAAYGPHQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQAILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKSDAAEASNHSGKEKDMVSGPVISSQSISSSGSEPLPSESAETWNSPNVQQDARGYKVSDRYEAHNYANSSGPYHNHSGLQSSTYHLHSGERLEEGDCSGQQRGSISSEHTSQRRLAIQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1778 458 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 128 394 IPR001289 GO:0003700|GO:0006355
Dere04g1778 458 MobiDBLite consensus disorder prediction 439 458 - -
Dere04g1778 458 ProSiteProfiles NF-YA/HAP2 family profile. 280 340 IPR001289 GO:0003700|GO:0006355
Dere04g1778 458 MobiDBLite consensus disorder prediction 316 389 - -
Dere04g1778 458 MobiDBLite consensus disorder prediction 149 222 - -
Dere04g1778 458 MobiDBLite consensus disorder prediction 149 180 - -
Dere04g1778 458 MobiDBLite consensus disorder prediction 406 458 - -
Dere04g1778 458 MobiDBLite consensus disorder prediction 406 426 - -
Dere04g1778 458 ProSitePatterns NF-YA/HAP2 subunit signature. 285 305 IPR018362 GO:0003677|GO:0016602
Dere04g1778 458 SMART cbf3 279 340 IPR001289 GO:0003700|GO:0006355
Dere04g1778 458 Gene3D - 280 342 - -
Dere04g1778 458 MobiDBLite consensus disorder prediction 359 389 - -
Dere04g1778 458 MobiDBLite consensus disorder prediction 190 222 - -
Dere04g1778 458 PRINTS CCAAT-binding transcription factor subunit B signature 283 305 IPR001289 GO:0003700|GO:0006355
Dere04g1778 458 PRINTS CCAAT-binding transcription factor subunit B signature 314 337 IPR001289 GO:0003700|GO:0006355
Dere04g1778 458 MobiDBLite consensus disorder prediction 316 334 - -
Dere04g1778 458 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 282 337 IPR001289 GO:0003700|GO:0006355
Dere04g1778 458 MobiDBLite consensus disorder prediction 335 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1778 Dere-ChrDere04 20342507 20346939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1778 110 385 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.128 1.53e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere04g1778 CBFB_NFYA 1.2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1778 04 20342507 20346939 Dere04g1778 04 20342507 20346939 ECH