Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1759 ATGAGCGATTCTGCTTACAGAGTCGAAACCACTTCTCGTCTCGCCCAATGGAGAATCGAAAATCTTGCCTCCTGCACTTACCGCAAATCTGATCCTTTCAAGATCGGCAAGTGGAATTGGCATTTGGCTGTGGAGAAAAACCGGGTTTTATTTGTTAAATTATACCCAGAAATATCAAATCTAACCAGAGACAATCCCCCGATTGCATCTTTCATCATTCGGGTCGTTAGTTCTGCTGGGGATCGCAAGACTTTGACCCATCCAGTAATAAAAGACAAACTGATCAAGAACAACGAAGACTTTGTCTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGACGTTGAGTTCCTTGATTTGAAGACAGCATCCCCAAACGGTGGAGAGCCGTGCTCAATCTGGGCAGAAGGACTTACACAGAAAAGGTCAAATGCAACTGCTCTTGAAGCTCTTGGTCGAATGCTAACAGAGGGAATTCACACAGACATAGTGATCAATGCGTCTGATGGAAGCATTGGAGCTCATCGTGCAGTTCTCGCTGCTCGATCCCCTGTCTTTCGCAGCATGTTCTCGCATAACCTCAAGGAGAAGGAGTTATCCACCATAAACATCTCAGACATGTCCATTGATGCTTGCCAGGCATTTCTCAATTATCTTTATGGGAGCATCAAACATGAAGAATTTCTCACTCATAGGTTGGTCCTTCTGCATGCAGCCGACAAATATGACATATCTGATCTGAAAGAAGCTTGCCATGAGAGCCTTCTAGAAGATATTGATGCAAAAAATGTTCTTGAGAGGCTCCAAAATGCATCCCTGTACCAATTACCAAAACTGAAGAGTAGTTGTTTGCGATATCTTGTGAAATTTGGAAAAATATTCGACATTCGGGATGATTTCAATGCCTTCTTGCAGTGTGCAGACAGGGATCTGATTGCTGAAGTCTTCCATGAAGTTCTCAATGCCTGGAAAGGGTTCTGA 987 0.4347 MSDSAYRVETTSRLAQWRIENLASCTYRKSDPFKIGKWNWHLAVEKNRVLFVKLYPEISNLTRDNPPIASFIIRVVSSAGDRKTLTHPVIKDKLIKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNGGEPCSIWAEGLTQKRSNATALEALGRMLTEGIHTDIVINASDGSIGAHRAVLAARSPVFRSMFSHNLKEKELSTINISDMSIDACQAFLNYLYGSIKHEEFLTHRLVLLHAADKYDISDLKEACHESLLEDIDAKNVLERLQNASLYQLPKLKSSCLRYLVKFGKIFDIRDDFNAFLQCADRDLIAEVFHEVLNAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1759 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Dere04g1759 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Dere04g1759 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Dere04g1759 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Dere04g1759 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Dere04g1759 328 Gene3D Potassium Channel Kv1.1; Chain A 139 291 IPR011333 -
Dere04g1759 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1759 Dere-ChrDere04 20106792 20108676 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere04g1759 BTB 5.1e-23 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1759 04 20106792 20108676 Dere05g0158 05 1992183 1997833 CCT
Dere04g1759 04 20106792 20108676 Dere04g1759 04 20106792 20108676 ECH