Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1744 ATGCCTGGAAGCTTAAGAAATCCCTCACTTTCTCCCGAAATCTTCTCTTTCACCTTACTTCTCTCAATAAACTCTCTTCTCATCTCATGTTGCTACTCCATTGATGAACAAGGCCAAGCTCTTCTTGCATGGAAGAACAGTTTGAACAGTACAGAGGATGTACTCTTAGCTTCTTGGAATCCTTCAGATTCAAGCCCTTGCAAATGGGTTGGAGTTCACTGCAACTCCAAGGGAGATGTGGAAGAGATAAACTTGAAATTTTTGGACTTGCAAGGCTCATTGCCTTCAAGTTTTCAACCTCTAAAGTCCTTGAAGGTTCTTGTACTCTCATCAACCAACCTCACAGGTACAATCCCAAGAGAAATCGGAGACTATGAGGAGCTCATTTCTATTGATCTCAGTGGTAATTCACTCTCGGGTGAAATTCCAGAAGATATTTGCAGGCTAAGAAAACTTGAGACTTTGTGTCTCCATACAAACTTCCTTGAAGGTAATATTCCATCCAACATTGGGAATCTCTCAAGTCTTGTGAATTTGACACTCTATGACAACCAGCTTAGTGGCGAAATCCCAAAGAGTCTTGGATCCTTAAAAAGGCTTCAAGTTTTCAGAGCAGGAGGGAATAAGAACCTTAAAGGTGAGCTGCCATGGGAGATTGGAAACTGCACCAACTTGGTCATGTTAGGACTTGCAGAAACCAGCATTTCTGGAAGCCTTCCTTCTTCAATAGGAATGCTGAAGAAGATTCAAACCATAGCCATTTACACCACTCTCATGTCAGGCTCAATTCCAGAGGAATTTGGGAATTGCAGTGAGCTACAGAATCTATACTTGTATCAGAACTCTATTACAGGTCCAATCCCAAGTCAACTTGGGAATCTCAGAAAGCTTCAGAGTCTTCTTTTATGGGAGAACAGTATAGTGGGTACAATCCCAGAAGAGCTTGGAAGCTGCACAGAGCTCAGAGTCATAGACTTTTCTGAAAACCTCCTCACAGGAAGCATACCAAGGAGTTTTGGGATGCTTTCGAATATGGAAGAGCTTCAGCTTAGTGTTAATCAATTATCAGGTACTGTACCTACTGAGATTACAAATTGCACTTCTCTGATTCAGTTGGAACTTGACAACAATGCTCTTTCTGGAGAGATTCCTGCTCTTATGGGTAACTTAAAAAGCTTGAACCTATTCTTTGCATGGCAGAACAGGCTCACCGGGAAAATCCCAGATAGTCTCTCCGAGTGCCAAGATCTTCAGGCACTTGATCTGTCTTACAACAATCTGATTGGTTCAATACCAAAATCACTTTTTGGGTTGAGGAATCTCACTAAACTCTTGCTTATTTCCAATGAACTATCAGGCTTCGTTCCTCCTGATATAGAAAACTGCACAAGTCTCTACAGGTTAAGGTTGAACGGAAATAGACTTGCAGGTCCCATTCCATCAGAGATAGGGAACTTGAAAAATCTCAACTTTATGGATATGAGCAGCAATCACTTTGTAGGGGAGATTCCTCCAACACTATCAGGATGCCAAAACCTTCAGTTTCTTGACCTTCATTCAAATTCTTTCACTGGTTCTCTCCCAGAAACTCTGCCCAGAAGCCTTCAATTAATAGATTTCTCAGATAACAGGCTCACTGGTTCACTGAGTCCTACCATTGGTTCATTAAGTGAACTAACCAAGCTCAATTTGGGAAGGAATCAACTTAGTGGAAAAATCCCAGAAGAAATCTCATCCTGCGATAAGCTTCAACTTCTAGACTTGGGAAGCAATGATTTCTCAGGGGAAATTCCAAAGCAAGTGGGTCAAATCCCTTCACTGGAAATCTCATTAAATCTCAGCTTCAATCAACTTTCTGGCCAAATCCCATTTCAATTCTCTGGTCTTACCAAATTGGGTGTGCTTGATCTCTCCCACAACAACCTCTCAGGGAATCTAAACTCCCTCTCTGACCTTCAAAACCTTGTTTCCTTAAACGTCTCCTTCAACGACTTCTCTGGTGAATTACCCAACACCCCATTTTTCAAAAAGCTACCTTTGAGTGACCTCACAGCAAATAAAGGCCTTTACATCTCCGGTGCCGGAGTTTTGACTCCGGCCGACGGAGTGGGGTCCAGTAAAGTCCATGCCAGATCAGCAATGAAGTTTTTCATGTCTGTTCTCTTAAGCATAAGTGCAGTACTAGTACTTCTCACTATCTATGCTTTGGTTCGTTCTCATATTCAAAACAGAGCAATCATGGAAGACAACACATGGGACATGACTCTGTATCAGAAGCTCGAAATCTCCTCAATTGATGACGTCATCAAGAGCCTGACGTCATCCAATGTGATCGGCACTGGCAGCTCTGGGGTGGTGTACAGAGTAACAATCCCCGGTAATCCCAACGGCGAAAGCACAAAAACACTAGCAGTCAAGAAAATGTGGTCTTCAGAGGAATCTGGAGCGTTCGACTCAGAGATTCAAACTCTGGGTTCGATTCGGCACAAGAACATCGTGAGACTCCTAGGTTGGGGATCGAACAAGAACCTGAAGCTTCTGTTCTACGACTACCTTCCCAATGGGAGTTTGAGCTCAATGCTTCATGGGTCCGGGAAAGGAGGGGCAGAGTGGGAGACGAGGTACGAGGTTGTACTGGGCGTGGCCCACGCGCTGGCTTATTTGCACCATGACTGTGTTCCTCCGATACTGCACGGAGATGTGAAGGCCATGAATGTGTTATTGGGTGACGGATTTCAGCCTTACCTTGCTGATTTTGGGTTAGCGAGGATTGTTAATGGACATGGTGATGCTCATGATTCTGATTCTAAGCCACTTCATAGACCGTATCTTGCTGGTTCCTATGGATACATGGCTCCTGAGCATGCATCAATGCAGCGAATTACAGAGAAGAGTGACGTGTACAGCTACGGTGTAGTCCTTCTAGAGGTGCTGACAGGGAGGCACCCACTGGACCCAACCCTACCGGGTGGTGCACACATGGTCCAGTGGGTTCGCAACCACCTAGCCAGCGGGGGTGACCCCTGCGACATTCTTGATCCAAAGCTCAGGGGCAGGGCCGACCCCACCATGCACGAGATGCTTCAGACTCTGGCCGTCTCCTTCCTCTGTGTCACCTCCAAACCCGACGACCGTCCGACGATGAAGGACGTCGTGGCCATGCTCAAGGAGATCAGACCTCCTGAGACCTCAAGGGCTGACCAGCATTACTCTGATGTGTTGAAGAAGGAGGTTAAGTCGTCGTCACTGGGCTCTCCATATCCACTACCTCCAAAGGGCTTGGTCTCTCAGGGATCTTCTAACTGTTCCTTTCATTTCTCAGATGATTCCGTCTAA 3336 0.4529 MPGSLRNPSLSPEIFSFTLLLSINSLLISCCYSIDEQGQALLAWKNSLNSTEDVLLASWNPSDSSPCKWVGVHCNSKGDVEEINLKFLDLQGSLPSSFQPLKSLKVLVLSSTNLTGTIPREIGDYEELISIDLSGNSLSGEIPEDICRLRKLETLCLHTNFLEGNIPSNIGNLSSLVNLTLYDNQLSGEIPKSLGSLKRLQVFRAGGNKNLKGELPWEIGNCTNLVMLGLAETSISGSLPSSIGMLKKIQTIAIYTTLMSGSIPEEFGNCSELQNLYLYQNSITGPIPSQLGNLRKLQSLLLWENSIVGTIPEELGSCTELRVIDFSENLLTGSIPRSFGMLSNMEELQLSVNQLSGTVPTEITNCTSLIQLELDNNALSGEIPALMGNLKSLNLFFAWQNRLTGKIPDSLSECQDLQALDLSYNNLIGSIPKSLFGLRNLTKLLLISNELSGFVPPDIENCTSLYRLRLNGNRLAGPIPSEIGNLKNLNFMDMSSNHFVGEIPPTLSGCQNLQFLDLHSNSFTGSLPETLPRSLQLIDFSDNRLTGSLSPTIGSLSELTKLNLGRNQLSGKIPEEISSCDKLQLLDLGSNDFSGEIPKQVGQIPSLEISLNLSFNQLSGQIPFQFSGLTKLGVLDLSHNNLSGNLNSLSDLQNLVSLNVSFNDFSGELPNTPFFKKLPLSDLTANKGLYISGAGVLTPADGVGSSKVHARSAMKFFMSVLLSISAVLVLLTIYALVRSHIQNRAIMEDNTWDMTLYQKLEISSIDDVIKSLTSSNVIGTGSSGVVYRVTIPGNPNGESTKTLAVKKMWSSEESGAFDSEIQTLGSIRHKNIVRLLGWGSNKNLKLLFYDYLPNGSLSSMLHGSGKGGAEWETRYEVVLGVAHALAYLHHDCVPPILHGDVKAMNVLLGDGFQPYLADFGLARIVNGHGDAHDSDSKPLHRPYLAGSYGYMAPEHASMQRITEKSDVYSYGVVLLEVLTGRHPLDPTLPGGAHMVQWVRNHLASGGDPCDILDPKLRGRADPTMHEMLQTLAVSFLCVTSKPDDRPTMKDVVAMLKEIRPPETSRADQHYSDVLKKEVKSSSLGSPYPLPPKGLVSQGSSNCSFHFSDDSV 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1744 1111 FunFam Leucine-rich receptor-like protein kinase family protein 34 193 - -
Dere04g1744 1111 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
Dere04g1744 1111 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Dere04g1744 1111 Gene3D Ribonuclease Inhibitor 431 531 IPR032675 -
Dere04g1744 1111 Gene3D Ribonuclease Inhibitor 610 694 IPR032675 -
Dere04g1744 1111 Pfam Protein kinase domain 775 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1744 1111 Gene3D Phosphorylase Kinase; domain 1 742 851 - -
Dere04g1744 1111 SUPERFAMILY RNI-like 287 662 - -
Dere04g1744 1111 PANTHER UNNAMED PRODUCT 302 985 - -
Dere04g1744 1111 ProSiteProfiles Protein kinase domain profile. 772 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1744 1111 Gene3D Ribonuclease Inhibitor 206 430 IPR032675 -
Dere04g1744 1111 SUPERFAMILY Protein kinase-like (PK-like) 763 1076 IPR011009 -
Dere04g1744 1111 Gene3D Ribonuclease Inhibitor 532 609 IPR032675 -
Dere04g1744 1111 Gene3D Transferase(Phosphotransferase) domain 1 852 1082 - -
Dere04g1744 1111 SUPERFAMILY RNI-like 82 394 - -
Dere04g1744 1111 FunFam Putative LRR receptor-like serine/threonine-protein kinase 610 695 - -
Dere04g1744 1111 SMART LRR_typ_2 101 125 IPR003591 -
Dere04g1744 1111 SMART LRR_typ_2 438 462 IPR003591 -
Dere04g1744 1111 SMART LRR_typ_2 173 197 IPR003591 -
Dere04g1744 1111 SMART LRR_typ_2 629 652 IPR003591 -
Dere04g1744 1111 SMART LRR_typ_2 486 510 IPR003591 -
Dere04g1744 1111 SMART LRR_typ_2 294 318 IPR003591 -
Dere04g1744 1111 SMART LRR_typ_2 342 366 IPR003591 -
Dere04g1744 1111 SMART LRR_typ_2 556 580 IPR003591 -
Dere04g1744 1111 Pfam Leucine rich repeat 533 593 IPR001611 GO:0005515
Dere04g1744 1111 Pfam Leucine rich repeat 610 665 IPR001611 GO:0005515
Dere04g1744 1111 Pfam Leucine rich repeat 295 355 IPR001611 GO:0005515
Dere04g1744 1111 SMART serkin_6 772 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1744 1111 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Dere04g1744 1111 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Dere04g1744 1111 FunFam Leucine-rich receptor-like protein kinase family protein 337 609 - -
Dere04g1744 1111 FunFam Putative LRR receptor-like serine/threonine-protein kinase 756 851 - -
Dere04g1744 1111 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 194 285 - -
Dere04g1744 1111 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 852 1073 - -
Dere04g1744 1111 ProSitePatterns Protein kinases ATP-binding region signature. 778 807 IPR017441 GO:0005524
Dere04g1744 1111 MobiDBLite consensus disorder prediction 1062 1099 - -
Dere04g1744 1111 PRINTS Leucine-rich repeat signature 417 430 - -
Dere04g1744 1111 PRINTS Leucine-rich repeat signature 629 642 - -
Dere04g1744 1111 MobiDBLite consensus disorder prediction 1062 1076 - -
Dere04g1744 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1744 Dere-ChrDere04 19914524 19918365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1744 31 1111 Receptor kinase-like Gene Family AT5G56040 67.127 0.0 1447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere04g1744 Pkinase 7.2e-36 CL0016