Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1704 ATGGAAGAAGCTGCAGAAGATCTCTTATTTTCCTCTGGCCAGCACCACCCACATGCAAGCTCTGTTTTCAACCCCGCCGGAAACAGGGAACCTCCGATCAACCCAAACAACAATGAAGGACCACGCGCGCAGCGCGTGGTCATTAGAGAGCAGGACCAGCACATGCCGATCGCGAACATCATCAGAATCATGCGGCGAATTCTTCCGCCGCACGCCAAAATTTCCGACGAAGCTAAAGAGACCGTCCAAGAGTGTGTCTCCGAATACATAAGCTTCATAACCAGTGAGGCTAACCACCGGTGCCGGGAGGAGCAGCGCAAGACCGTGACGGCGGAGGACGTGCTTTGGGCTATGCAAAAGTTGGGCTTCGACGACTATGTGGAGCCTCTCACTGTCTTCCTCAGCCGCTACCGTGACGGCGACGGTGGCCGCTATGGTCCACGTGCGCAGCACGTGATGACTCCAGAGGATGCAGATGCACCTGCCCATTCGCCACCGCCACCCCACTACGGGTTGAGTTATCCGGCGAACCCGAATCCGATGGGGTCGCGTGCTGGTGGCTTGAGCAGTGGTCCGGCGTACTATGATCCATTTGCTTACTGGAGACAAGATCGTCTATGA 621 0.5652 MEEAAEDLLFSSGQHHPHASSVFNPAGNREPPINPNNNEGPRAQRVVIREQDQHMPIANIIRIMRRILPPHAKISDEAKETVQECVSEYISFITSEANHRCREEQRKTVTAEDVLWAMQKLGFDDYVEPLTVFLSRYRDGDGGRYGPRAQHVMTPEDADAPAHSPPPPHYGLSYPANPNPMGSRAGGLSSGPAYYDPFAYWRQDRL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1704 206 MobiDBLite consensus disorder prediction 144 185 - -
Dere04g1704 206 MobiDBLite consensus disorder prediction 160 174 - -
Dere04g1704 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 38 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere04g1704 206 FunFam Nuclear transcription factor Y subunit B-6 43 159 - -
Dere04g1704 206 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Dere04g1704 206 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Dere04g1704 206 PRINTS CCAAT-binding transcription factor subunit A signature 120 138 - -
Dere04g1704 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 55 118 IPR003958 -
Dere04g1704 206 SUPERFAMILY Histone-fold 51 144 IPR009072 GO:0046982
Dere04g1704 206 Gene3D Histone, subunit A 42 160 IPR009072 GO:0046982
Dere04g1704 206 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1704 Dere-ChrDere04 19466919 19468693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1704 19 144 CCAAT-HAP3 Transcription Factor Family AT5G47670 63.281 1.53e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere04g1704 CBFD_NFYB_HMF 6.2e-24 CL0012