LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1703	ATGGCTCCCTTCCCTCCCGATTCACCACAACAAGAACAAAGCTCAGCTTCCGATGACTTGCCGACCGAGGACATTGAAGCTCCGATGGATGAAGAGCCACCAGAACACCGTGCATCGATGCAAGAGCCAGAGCATCAAGACTACTTATTACCTATCAACGACGTGTCAAGAATCATGCAACGGGCTATTCCATCGCATGCAGAAATCAGCGACGACGCAAGAGAGGCCATACAAGTGTGTGCCACAGAGTTCATTCACTATCTCACTAACTTTATCAGCGGCAAATACGAGCAAGACGCCGTCCAAGTTAAGCGACGCCGGCAGGATTGCATACCAGTGACGGCCGAGGACGTGCTGTCGGCTTTAGAAAAGCTAGGTTATAAAGATTACTTCGATGTTCTCACCATCTTCCTTAGACGCCTCCGCGAACATAAGAGTGGCAGCTCTGCCGGACGTGGGCGGCACACGGTGGCCGAGCTGAGCGACCCACAACATGCCTCGGCTTCTCAGCCAATGATGCCACAGTGTTCCTCCCTGTCACTGCCAATGTTGCTTCGTCCGTCGCAACCGCCACTAATATTGGACGATGGATCGTTGGCCGGGCTGAGCAACCCGCAATATGCCCCGACTCCTCAGCCAATGCCGCCACAGCACTGTCATCTGCGGCAGCAGTTGCTTTCTCTTTCGCGGATGCCGCCACCAATATTCGATGATGGGTCGGTGGCCAGGCCAAGCAACCCGCAATATGCCCAGCCTCCACAACCAATGCTGCCACAGGATTATCATCTGCGGCAGCAGTTGCTTTCTCTTTCACGAATGCCACCAACATTCAATGATGGGTCGGCGGCACGGCCAAGCAACCTGCAATATGCCATGGCTTCTCAGCCAATGCTGCCGCAGCAGTTGCTTTCTCTTTCACGGCGGCGACCAATATGTGATGATGGGTCGGCGGCCGGGCCAAGCAACCAGCAATATGCCCTGGCTTCTCAACCAATACCGCCACAGTTTTCTCCTCCGTGGTTGCAGATGTTGCCTTCTCCGTCGCAGCCGCCACCAATATTGAATGATGGGTCATGGGCCGGGCCGAGCAACCCGCATTACGCCTCGGCTCCTCAGCCAATGTCGCCACCACCAATATTTGGTGATGGGTCTGTGGCCGGGCCGAGCACCCCGCAATATGCCCCAACTCCTCAGCCAATGTCACCACCGTTGTCTCCTTCGTTGGTGGAGAAGTTCCTTTCTTCACCGCAGCCACCACCAGTATTGGATGACGGGTCAGTGGCCGGGCCGAGCAGCCAACAATATGCCCCGACTCCCCAGCCACCGTCGCCACCGTTTTCTCCGTTGCTGCAGATGGGGTTTTCTCCGTCGCCGCCACCACCAATATTCGATGATGGGTCGGTGGTCGGGCCAAGCGACCCGGAACATGCCCCTGATCCTCAGCCAATGCCGCCACAGCTTTTTCCTCCGTCACTGCCACCACCAATATTGCATGATGGGTCGAAAGTCGGGTCGAGCGACCCGCAACATACCCTAGAGCCAATGCCACCATGGTTTTCTCCTCCGTCGTCACCGGAGTTGCCTCCTTCGTCACCGACCCCGCCAATATTGGATGATGGGTTGGTAGCTGGGCCGAGCGACCCGCAACATGCCCCGGATCCTCCGCCAATATCGTTTCAGTTTTCTCCTCCGTCACCACCGCCGTTGCTTCCTCCGTCGCCGCCGCCACCAATAATATTCGATGATGATGGGTCGGGTGCTGGTAGCGCCGGCCATGCTCCATGGTGGTACCGATACCGTGATCCATTGGCTGATGAAAAGAAAAAAGATGGTGTCTAA	1839	0.5639	MAPFPPDSPQQEQSSASDDLPTEDIEAPMDEEPPEHRASMQEPEHQDYLLPINDVSRIMQRAIPSHAEISDDAREAIQVCATEFIHYLTNFISGKYEQDAVQVKRRRQDCIPVTAEDVLSALEKLGYKDYFDVLTIFLRRLREHKSGSSAGRGRHTVAELSDPQHASASQPMMPQCSSLSLPMLLRPSQPPLILDDGSLAGLSNPQYAPTPQPMPPQHCHLRQQLLSLSRMPPPIFDDGSVARPSNPQYAQPPQPMLPQDYHLRQQLLSLSRMPPTFNDGSAARPSNLQYAMASQPMLPQQLLSLSRRRPICDDGSAAGPSNQQYALASQPIPPQFSPPWLQMLPSPSQPPPILNDGSWAGPSNPHYASAPQPMSPPPIFGDGSVAGPSTPQYAPTPQPMSPPLSPSLVEKFLSSPQPPPVLDDGSVAGPSSQQYAPTPQPPSPPFSPLLQMGFSPSPPPPIFDDGSVVGPSDPEHAPDPQPMPPQLFPPSLPPPILHDGSKVGSSDPQHTLEPMPPWFSPPSSPELPPSSPTPPILDDGLVAGPSDPQHAPDPPPISFQFSPPSPPPLLPPSPPPPIIFDDDGSGAGSAGHAPWWYRYRDPLADEKKKDGV	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1703	612	MobiDBLite	consensus disorder prediction	475	496	-	-
	Dere04g1703	612	MobiDBLite	consensus disorder prediction	145	173	-	-
	Dere04g1703	612	MobiDBLite	consensus disorder prediction	548	579	-	-
	Dere04g1703	612	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	34	163	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Dere04g1703	612	MobiDBLite	consensus disorder prediction	328	612	-	-
	Dere04g1703	612	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	50	90	IPR003958	-
	Dere04g1703	612	PRINTS	Proline rich extensin signature	203	215	-	-
	Dere04g1703	612	PRINTS	Proline rich extensin signature	395	420	-	-
	Dere04g1703	612	PRINTS	Proline rich extensin signature	334	350	-	-
	Dere04g1703	612	PRINTS	Proline rich extensin signature	361	378	-	-
	Dere04g1703	612	PRINTS	Proline rich extensin signature	434	446	-	-
	Dere04g1703	612	Gene3D	Histone, subunit A	39	175	IPR009072	GO:0046982
	Dere04g1703	612	MobiDBLite	consensus disorder prediction	1	43	-	-
	Dere04g1703	612	MobiDBLite	consensus disorder prediction	435	465	-	-
	Dere04g1703	612	MobiDBLite	consensus disorder prediction	514	535	-	-
	Dere04g1703	612	MobiDBLite	consensus disorder prediction	332	352	-	-
	Dere04g1703	612	SUPERFAMILY	Histone-fold	46	171	IPR009072	GO:0046982

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1703	Dere-ChrDere04	19460769	19463787	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1703	46	143	CCAAT-HAP3 Transcription Factor Family	AT1G21970	43.878	9.90e-22	92.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Dere04g1703		CBFD_NFYB_HMF	4.4e-09	CL0012