Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1684 ATGGCGGACTCCGACAACGATTCCGGAGGGGCGCAGAACGCGGGAGCCAATGCGCACAGCAGTGAATTGTCGCCGCGGGAGCAGGACCGGTTCCTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGGAAGACCATCAACGGGGACGACCTGCTCTGGGCGATGACCACGTTGGGATTCGAGGACTACGTGGAGCCCCTCAAGATTTACTTGCAGAGGTTCAGGGAAATGGAGGGCGAGAAGAGCGTCGTGGCGGCGCGTGATAAGGAAGGCGGAGGCGCGTCGAATAGCGCGTTTGACAGCGGTGGCGGAGGTGCGGTGTACGGTGCTGGTGGTGGTGGAATGGGGATGATGATGCACCAGGGACACGTGTACGGCTCAGGCGGGTTCCATCAAATGGGTGTGAGTGGTGGTCCTGTTATGGGTAAAAGTGGGCAAACTTATCCGGGTCATGGATCCAATGCGGGTCGGCCCAGATAG 600 0.6033 MADSDNDSGGAQNAGANAHSSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVVAARDKEGGGASNSAFDSGGGGAVYGAGGGGMGMMMHQGHVYGSGGFHQMGVSGGPVMGKSGQTYPGHGSNAGRPR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1684 199 SUPERFAMILY Histone-fold 28 129 IPR009072 GO:0046982
Dere04g1684 199 FunFam Nuclear transcription factor Y subunit B-3 20 141 - -
Dere04g1684 199 Gene3D Histone, subunit A 18 140 IPR009072 GO:0046982
Dere04g1684 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere04g1684 199 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Dere04g1684 199 MobiDBLite consensus disorder prediction 1 22 - -
Dere04g1684 199 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere04g1684 199 MobiDBLite consensus disorder prediction 1 28 - -
Dere04g1684 199 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Dere04g1684 199 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Dere04g1684 199 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Dere04g1684 199 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1684 Dere-ChrDere04 18901224 18901823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1684 1 161 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.074 2.77e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere04g1684 CBFD_NFYB_HMF 1.9e-27 CL0012