Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1672 ATGATGGCCACAAAGGATCGTCGTTTCATAGAATGGAAAGAGCAATTTATTTCGCAGGAGCGTGGCAATCGTGTGGTCCACTATTACCTGAAGGATTCTGCGGGGGAATCCATCCTTGCAGTTGTAGGCACTGAGAGGAGCCTTAGACACATGTTCTATGTTGTTGCTGAGGAGTTTCTGGAAGTTTGTGGGAAGGAGGGTAACATCCATGCCGGTTTCAAATGGAGGTCCAGAAGAGAGGTGGTGGATTGGTTGACATCAATGCTATCAAAGCAGCATCTGCTGGGAGACAGGAGTGTATCGCCAAGTCAGAACATGATACATGCTCATGAGACCACAGATAGCATTATCAAAGAATTTATTGATATGCATACACATATATCAGATGACAAGGGCCTTCTAATGAGTAACTTCAAAGGACACAATTCTGACATTGTTTGGTCAGGAGTTGCATGGACATGTGGCAAACAACTTAAGCATTATCCTGCTTTTTGCAGGAATGGGATCAAAATAGTGACTCAATCTTTTGTTTTCGTCATGGCGACGGGAGAGAATCATTACATTGCTTATTTGGAGGATATGTACGAAGACAGGAGGGGTCAGAAAAAGGTCAAAGTAAGGTGGTTTCACCATAATCAGGAAGTCAAAGGTGTAATTCCTGTAAGAAATCCTCACCCTCAAGAAGTTTTTATCACATCTTATTCCCAAGTAATTAGTGCAGAGTGTGTTGATGGTCTTGCTACAGTCTTAACTCGGGAACATTATGAAAAATGCTTGCCTGCTTTCCCCCATTCCTCATCAGATAGAATCCATATGTGCTTTAGGCAATTCAGAAACAACAAAGTGAAGCCCTTTGACTTAAGTAAATTGCGTGGCTACTACAATCAACCAATCCTCTCTTGCTTGAACCTTGATTCCTTCCAAAACCCTAAATGCAATAACCTTGCAGAAGAAGATGAAGAGTTGAGTGCAGGTGATGATGCAAAGTCAGAAGGTAAGAGGACCAAAAGAGGTAGGGGATCTCCTCAGTATTTGATAGATCGCCAGGGAGTTAGGAAATTAAGTAGAAGTCAGCAAATGATGGTGTATAAAACCTTCCAGAATGTAAATTATGCTAGGTCAGATAGGAGATTACTTTCCCTGAAACAGGTTGATTGTCAGCCTGGTTATAACTCCATATACAAGGTTGATGACAAGATAGAGTTACTCTGTCAAGACAGTGGCATTAGAGGCTGCTGGTTCAGGTGTACAGTTGTGAGGGTATCACGGAAACAGATAAAAGTCCAATATGATGATGTGCAGGATGAAGATGGAAGCGGCAATCTTGAGGAATGGATCCCCGCTTTTAAACTTGCCATGCCTGATAAACTTGGGATGAGACATTCTGGCCGGCCCACCATCAGGCCAGTCCCAACTTTTGAGGAGCAACAAGAGCTGGCTGTTGAGGTAGGAACTGCAGTAGATGCATGGTGGAGTGATGGCTGGTGGGAGGGTGTTGTAAGTGGAATTGCTGACTGTGGTGATGATGATGTGCAAGTTTACTTTCCCGGTGAAGGCTTGCCAATGAAGGTGTGCAAGAAGGATCTAAGAATATCAAGGGATTGGTTGGGGGACCGGTGGGTTGATATTGAGTTAAAGCCTAACATAGCCTCTACCATATTGGCAGTTAATAGCTCTAACACAAAGTTTTCAGTGTCCCCGTCTATCCCCAAAGATGTTGACTCTTTTGGGGTTGCTGTTTCATGTCAAGATGTTCCTGTTACTGAGAAGTCTAATGAACTAAATATTGTATCTGAAGATGCGAATTGGGTTCATGGTAACAAGACCCCTTCACAAGAAGAGAGAAGTACTGAAGTTGTTGAGACTGAGATACATGGCAGTTGTGATAATGAAGATAACAATGATGACGAGGACAATAAGGACAACAATGATGGCGATGATAACAAAAACAATGATAACGATGATATGGACATGGAGGTGTTTGGGACTTCTGGAGAGGACTCCAAAGCTGTAGAACCCATCGAAGTGGCTGTATAA 2037 0.4296 MMATKDRRFIEWKEQFISQERGNRVVHYYLKDSAGESILAVVGTERSLRHMFYVVAEEFLEVCGKEGNIHAGFKWRSRREVVDWLTSMLSKQHLLGDRSVSPSQNMIHAHETTDSIIKEFIDMHTHISDDKGLLMSNFKGHNSDIVWSGVAWTCGKQLKHYPAFCRNGIKIVTQSFVFVMATGENHYIAYLEDMYEDRRGQKKVKVRWFHHNQEVKGVIPVRNPHPQEVFITSYSQVISAECVDGLATVLTREHYEKCLPAFPHSSSDRIHMCFRQFRNNKVKPFDLSKLRGYYNQPILSCLNLDSFQNPKCNNLAEEDEELSAGDDAKSEGKRTKRGRGSPQYLIDRQGVRKLSRSQQMMVYKTFQNVNYARSDRRLLSLKQVDCQPGYNSIYKVDDKIELLCQDSGIRGCWFRCTVVRVSRKQIKVQYDDVQDEDGSGNLEEWIPAFKLAMPDKLGMRHSGRPTIRPVPTFEEQQELAVEVGTAVDAWWSDGWWEGVVSGIADCGDDDVQVYFPGEGLPMKVCKKDLRISRDWLGDRWVDIELKPNIASTILAVNSSNTKFSVSPSIPKDVDSFGVAVSCQDVPVTEKSNELNIVSEDANWVHGNKTPSQEERSTEVVETEIHGSCDNEDNNDDEDNKDNNDGDDNKNNDNDDMDMEVFGTSGEDSKAVEPIEVAV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1672 678 MobiDBLite consensus disorder prediction 611 629 - -
Dere04g1672 678 SMART BAH_4 169 288 IPR001025 GO:0003682
Dere04g1672 678 CDD BAH_plant_1 164 293 - -
Dere04g1672 678 SMART agenet_At_2 392 457 IPR014002 -
Dere04g1672 678 SMART agenet_At_2 479 537 IPR014002 -
Dere04g1672 678 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 383 624 - -
Dere04g1672 678 Pfam BAH domain 176 277 IPR001025 GO:0003682
Dere04g1672 678 MobiDBLite consensus disorder prediction 326 341 - -
Dere04g1672 678 MobiDBLite consensus disorder prediction 601 678 - -
Dere04g1672 678 MobiDBLite consensus disorder prediction 318 342 - -
Dere04g1672 678 Pfam Agenet domain 397 471 IPR008395 -
Dere04g1672 678 Gene3D - 137 298 IPR043151 -
Dere04g1672 678 CDD Tudor_Agenet_AtDUF_rpt1_3 394 471 - -
Dere04g1672 678 ProSiteProfiles BAH domain profile. 169 288 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1672 Dere-ChrDere04 18792452 18796542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1672 406 535 PHD Transcription Factor Family AT5G58610 30.827 6.32e-13 70.5