Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1653 ATGGCTACCATCTCCACTTTCTACCCTTACAATCCCGTTTGTCCTTCTTCTTCTTCTTCTTCCTCTTTGTTTCCGAATTTGAACAAGTGGCGTTTCGCCCCCAATTCTACTCGTGGAAGAGGAACACGCAAGTTCGTGGTGCTTGCGGCGCATTCCAATCCTAAGATTCTGAAGAACAACCGGAAATCGAGGTTCGGACAGGCGCTGTCGCCATACGACAGTGACGCAGAAGATGAAGCAATGGAAGACGAGGACGAGGAGGACGACGATGATGTTGTGCCAGATGATTGGCTATCTGATGAAGAATTTGCAGAGACTGCTGACTTTGATGTTAATGATGAGAAATTGAAGTCACAGAAAACAAAAGTAAAAGCTAGGCAACAGGAAAAAGGGTGGGGTGTGAGATCTTTTGATTCTGGACAAAGCCCTAAAATGTTCAAAAGCGAGAAAGTGGCTTCCTTTGAACCAAATAGCAGTGTAAAGGTTGGTAGAAATTTAATGGAGAACAGATATCCTCGGTTGTCAGAAGAGATTCATTTGGATAAGAAGTGGTTACCACTTCTTGACTACTTAACCACATTTGGATTCAAGGAATCACACTTCATCCAGATGTATGAGAGGCATATGCCCTCACTTCAAATTAATGTATGTTCTGCACAGGAAAGGTTAGAATACTTATTGAGTATTGGTGTCAAACATAGAGATGTAAGAAGAATCCTTCTGAGGCAGCCACAAATTCTGGAGTATACAGTGGAGAAAAATTTGAAGTCCCATGTTGCTTTCTTGATGGGTTTGGGTATACCAAATTCCAGAGTAGGCCAAATAATTGCTGCTGCTCCATCCCTGTTTTCTTATAGTGTTGAGAATTCATTAAAACCAACAGTAAGATATTTAGTTGAGGAAGTTGGCATCAAGGAAAAAGATCTGGGTAAAGTCATTCAGCTGAGCCCGCAAATTCTAGTTCAGCGTATTGACATTTCCTGGAATACTCGATATATGTTTCTAGCCAAAGAGCTGGGAGCACCCAGAGATAGCATTGTGAAGATGGTGACCAAACATCCCCAATTTCTCCATTATAGTATAGATGATGGATTACTGCCCAGGATTAATTTCCTAAGGAGCATAGGAATGCGAAATTCAGACATCTTAAAAGTCTTGACTAGTCTTACACAGGTTCTATCTCTGTCACTGGAGGAGAATCTAAAGCCCAAGTATTTGTATCTGGTGAATGAACTTCAGAATGAGGTTCAGTCCTTGACCAAATATCCAATGTACCTTAGCTTGTCTTTAGACCAGAGAATACGTCCGCGTCACAGGTTCTTGGTTTCTCTGAAGAAAGCTCCGAAAGGACCATTTCCACTTGGATCGTTGGTTCCAACTGATGAATGCTTTTGTCAGCAGTGGGCTGGAACTAGTTTGGATAAATATTTAGCATTTCGCCAGAGACTATTACTCAAGAAATTTGCAGAAAAATATCAAAAGAAAATATAA 1491 0.4118 MATISTFYPYNPVCPSSSSSSSLFPNLNKWRFAPNSTRGRGTRKFVVLAAHSNPKILKNNRKSRFGQALSPYDSDAEDEAMEDEDEEDDDDVVPDDWLSDEEFAETADFDVNDEKLKSQKTKVKARQQEKGWGVRSFDSGQSPKMFKSEKVASFEPNSSVKVGRNLMENRYPRLSEEIHLDKKWLPLLDYLTTFGFKESHFIQMYERHMPSLQINVCSAQERLEYLLSIGVKHRDVRRILLRQPQILEYTVEKNLKSHVAFLMGLGIPNSRVGQIIAAAPSLFSYSVENSLKPTVRYLVEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRYMFLAKELGAPRDSIVKMVTKHPQFLHYSIDDGLLPRINFLRSIGMRNSDILKVLTSLTQVLSLSLEENLKPKYLYLVNELQNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDKYLAFRQRLLLKKFAEKYQKKI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1653 496 SMART mt_12 347 378 IPR003690 GO:0003690|GO:0006355
Dere04g1653 496 SMART mt_12 273 305 IPR003690 GO:0003690|GO:0006355
Dere04g1653 496 SMART mt_12 237 268 IPR003690 GO:0003690|GO:0006355
Dere04g1653 496 SMART mt_12 383 415 IPR003690 GO:0003690|GO:0006355
Dere04g1653 496 SMART mt_12 310 342 IPR003690 GO:0003690|GO:0006355
Dere04g1653 496 SMART mt_12 416 447 IPR003690 GO:0003690|GO:0006355
Dere04g1653 496 PANTHER CGI-12 PROTEIN-RELATED 184 467 IPR003690 GO:0003690|GO:0006355
Dere04g1653 496 FunFam Transcription termination factor MTERF9, chloroplastic 248 483 - -
Dere04g1653 496 MobiDBLite consensus disorder prediction 59 93 - -
Dere04g1653 496 MobiDBLite consensus disorder prediction 75 93 - -
Dere04g1653 496 Pfam mTERF 170 443 IPR003690 GO:0003690|GO:0006355
Dere04g1653 496 Gene3D Transcription termination factor 3, mitochondrial 246 483 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere04g1653 mTERF 3.5e-43 No_clan