LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1650	ATGGACGCCGCTATCAACTCCGCCGAAACCCACTCGGGTTCGGAGCTTCGGCTCCGAGAAGCCGCGTCGACCGATCCGGGTCAATTTGGCTCATGGCAGAGCTCCGACGTCGTCGTTTCCCGCGGTGCCAGGTACAAGCTCATGTCGCCTGCCAGCCTTCCGATCTCCAGGTCGCCCTGTATCACGATTCCGCCCGGGCTCAGTCCGACGTCGTTTCTGGAGTCGCCGGTGCTTCTGTCCAACGTTAAGGTGGAGCTTTCACCGACTACCGGGTCCCTTGCGAAGCCTCAGTCTGTTCAGGGTTCTGTTGCTTCTGCTACATATCCTGTAACCACTGTATGCTTCAATACCAATACTGTTGATGACAGAATATCAGGCTTCTTTGACTTTAATCCAAACAGTAGATCAAATATGGTTCCCGCAGATTTCAGCTGCCATGTTAATGAACGATCTAGGCAAATTGAAGATTCAGGCCAAGCTCAGTCATCTGCTTCATCACCATTAGTGAAAACTGAGATAGCAGTGCCCTCAAATGAATTAAGTCTATCGTCACCTGTTCAAATGGTTTGTTCAGGGGCTAGTGCACCTGTCGAACCCGATTCAGATGATTCTAACCACAGAGGCAACGTGCCCTATGTGCTTCAAGCTTCACAAGTTGAGGTTAGAGGCAATGGTCTTTCAGTTGCAGGTGAAAGAACATCTGATGATGGATATAATTGGCGGAAATATGGACAGAAACATGTTAAAGGGAGTGAATTTCCACGCAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTATTTGAACGCTCTCATGATGGGCAAATTACTGAGATAATTTACAAGGGATCACATGATCATCCTAAACCTCAACCGAGTCGCCGATACTCTGCTGGAACTACTATGTCTATGAATGAGGAGAGATCCGATAAGCCTTCATCTTTGTCCAACCAAGATGCCAATTTGTATGGTCAAGTGTCTCACACTGCTGAGCCCAACAGTACTCCAGAGCTATCTCCTGTCGCAGCAAATGATGATAGTCTAGAGGGTGCAGGATTAGCTTCTAATAAAGTCAGTGATGAGGTTGATGATGATGACCCCTTCTCTAAGCGAAGGAAGATGGACCTTGGAAATGCTGACATCACCCCTATAGTTAAGCCTATTCGGGAACCAAGGGTTGTTGTGCAAACTCTGAGTGAGGTTGACATATTGGATGATGGGTATCGCTGGCGTAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCGAACCCTAGGAGTTACTATAAATGCACGAATGCTGGTTGCCCTGTTAGAAAACATGTGGAGAGGGCATCGCATGATCCCAAAGCAGTAATAACCACATATGAGGGTAAGCACAATCATGATGTACCTACTGCAAGGAGTAGTAGCCATGATACAGCAGGACCAGCAGCTGCAGTTGGCCAGACAAGAATAAGATCAGAAGAAAGTGATACTATTAGCCTTGACCTTGGCATGGGAATTAGCCCAGCTGCTGAAAATAAATTGAACGGGCAAGGGCAAATGCTGCTCTCTGATTTCGGGAACAGTCAAACTCATGCCAGCAATTCCAGTTTCAAGTTCGTTCATACTACCCCAGCACCGGCATACTTTGGTGTTTTAAATAATGGCGCAAATCCATTTGGTTCGTCTAGAGAACCTCCATCGTTGAACCATTCAACTTATCAGTGCCCGCAGAATATGGGAAGAATACTAACAGGCCCATGA	1755	0.4701	MDAAINSAETHSGSELRLREAASTDPGQFGSWQSSDVVVSRGARYKLMSPASLPISRSPCITIPPGLSPTSFLESPVLLSNVKVELSPTTGSLAKPQSVQGSVASATYPVTTVCFNTNTVDDRISGFFDFNPNSRSNMVPADFSCHVNERSRQIEDSGQAQSSASSPLVKTEIAVPSNELSLSSPVQMVCSGASAPVEPDSDDSNHRGNVPYVLQASQVEVRGNGLSVAGERTSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGSHDHPKPQPSRRYSAGTTMSMNEERSDKPSSLSNQDANLYGQVSHTAEPNSTPELSPVAANDDSLEGAGLASNKVSDEVDDDDPFSKRRKMDLGNADITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSSSHDTAGPAAAVGQTRIRSEESDTISLDLGMGISPAAENKLNGQGQMLLSDFGNSQTHASNSSFKFVHTTPAPAYFGVLNNGANPFGSSREPPSLNHSTYQCPQNMGRILTGP	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1650	584	MobiDBLite	consensus disorder prediction	463	484	-	-
	Dere04g1650	584	MobiDBLite	consensus disorder prediction	283	376	-	-
	Dere04g1650	584	SMART	WRKY_cls	407	466	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	SMART	WRKY_cls	234	292	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	74	495	IPR044810	GO:0003700
	Dere04g1650	584	MobiDBLite	consensus disorder prediction	297	344	-	-
	Dere04g1650	584	MobiDBLite	consensus disorder prediction	361	376	-	-
	Dere04g1650	584	ProSiteProfiles	WRKY domain profile.	229	293	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	Pfam	WRKY DNA -binding domain	235	291	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	Pfam	WRKY DNA -binding domain	408	464	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	SUPERFAMILY	WRKY DNA-binding domain	232	293	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	ProSiteProfiles	WRKY domain profile.	402	467	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	Gene3D	WRKY domain	392	468	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	Gene3D	WRKY domain	227	294	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1650	584	FunFam	WRKY transcription factor 33	394	460	-	-
	Dere04g1650	584	MobiDBLite	consensus disorder prediction	1	33	-	-
	Dere04g1650	584	FunFam	WRKY transcription factor	224	294	-	-
	Dere04g1650	584	SUPERFAMILY	WRKY DNA-binding domain	399	467	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1650	Dere-ChrDere04	18547573	18552047	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1650	48	584	WRKY Transcription Factor Family	AT4G26640	55.797	0.0	535

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere04g1650		WRKY	1.4e-25	CL0274