Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1646 ATGAAATCTCTTTCAATTTCATCGTCCACGTCGTCGTCGTCTTCGCTTCCGCTGATTTTCCCATACGCGAAATTGAACTATCGTTTTCGCGTTCGCTTAGCTGACACCGTATATTCATTGTTCACAGTTGGAGTGAAAGGAGAACAGATGGAATCAGATCTTGGTAAGCTTTTCATTGGAGGAATTTCTTGGGATACTGATGAAGAACGTCTTAAAGAATATTTCGGGAAATATGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACAACAGGTCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTGTAGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCACGCAATAAATAGAAATTCTGGTAATGTCCATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTCGGAGGTTTGCCTTCAAGTATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATTACTGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTCGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGACCCAGCCGGAGCCCATTGTTAGGAAATAATTTTGGTTTTAATAGGGCCAGTAGCTACCTAAACAGTTATGCTCAGAGTTATAATATGAGTCCAATCGGAGGCTATGGAATGAGGATGGATGGTAGGTTTAGTCCTCTTACAAGTGGTAGAAGTGGATTTTCCCCATTTGGCACCAGTGGTTATGGAATGGGACTGAATCTGGATACAGGATTGAGTCCTGGATATGGTGGGACTTCAAATTATGGGAGCAATCTAGGATATGGTCGGATGATTAGTCCTTTTTACAATGGCAACTCTAGCAGATATACCACTCCTATAGGATATAGTGGGAATAATGGGAGAAGTGATTCTCTTATGAACTCAACTCCTCGAAATGTCTGGGGAAATGGTGGCCTAAATAATGCCAATAGCCAAGTCAGCACTGGTGCTAGCTTGGGATCTGGAAGTGGGACTTTTGGTGTTTCCATGAAAAATAGTGGCACAAATTGGGGTCAATCTCTTCCAGCGCAGGGTGGAGTTACTGCCTCTAGCTATACCGCTGGGATTAATGTTTACGAAGGTGGAGATAGCAGTTTTGGGTTAGGAGGAGCAGGGTATGGAAGAAATGGCAGTATAGGTGTAAATTCATCATTTAATGCATCACCTGGTGGTTATGAAGGATCCTATGGGGACTTGTACAACAGTGGTTCAGTTTACACTGACTCAACTTGGCGATCTGCTGCTTCTGACCTAGATGGTTCTGGCCCATTTGGTTATGGGCTTGGTGGTATAGCCTCAGAGGATCCTGTAAAGAGTTCAGAGGGTTATATTGGAAACTACAATGTTTCAAGCAGACAACCCAATAGAGGAATCGCTGCCTAG 1575 0.4337 MKSLSISSSTSSSSSLPLIFPYAKLNYRFRVRLADTVYSLFTVGVKGEQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHAINRNSGNVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLLGNNFGFNRASSYLNSYAQSYNMSPIGGYGMRMDGRFSPLTSGRSGFSPFGTSGYGMGLNLDTGLSPGYGGTSNYGSNLGYGRMISPFYNGNSSRYTTPIGYSGNNGRSDSLMNSTPRNVWGNGGLNNANSQVSTGASLGSGSGTFGVSMKNSGTNWGQSLPAQGGVTASSYTAGINVYEGGDSSFGLGGAGYGRNGSIGVNSSFNASPGGYEGSYGDLYNSGSVYTDSTWRSAASDLDGSGPFGYGLGGIASEDPVKSSEGYIGNYNVSSRQPNRGIAA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1646 524 Gene3D - 154 234 IPR012677 -
Dere04g1646 524 SMART rrm1_1 156 228 IPR000504 GO:0003723
Dere04g1646 524 SMART rrm1_1 56 127 IPR000504 GO:0003723
Dere04g1646 524 CDD RRM1_hnRNPA_hnRNPD_like 57 127 - -
Dere04g1646 524 FunFam Heterogeneous nuclear ribonucleoprotein 1 54 136 - -
Dere04g1646 524 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 50 520 - -
Dere04g1646 524 CDD RRM2_Hrp1p 156 233 - -
Dere04g1646 524 SUPERFAMILY RNA-binding domain, RBD 154 315 IPR035979 GO:0003676
Dere04g1646 524 Gene3D - 55 137 IPR012677 -
Dere04g1646 524 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 215 IPR000504 GO:0003723
Dere04g1646 524 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 124 IPR000504 GO:0003723
Dere04g1646 524 SUPERFAMILY RNA-binding domain, RBD 50 153 IPR035979 GO:0003676
Dere04g1646 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 131 IPR000504 GO:0003723
Dere04g1646 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Dere04g1646 524 FunFam Heterogeneous nuclear ribonucleoprotein 1 152 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1646 Dere-ChrDere04 18478310 18484830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1646 54 229 Eukaryotic Initiation Factors Gene Family AT2G23350 24.719 1.64e-09 58.5