Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1634 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAACTTGGGAGGCAGCCTGCCAACACCAAGCTATCAAGCAACAAAACAGTTAGGAGGGTTAGGGTTCGAGGTGGAAATGTGAAGTGGCGGGCTTTGAGGCTTGATACTGGAAATTACTCTTGGGGGAGTGAAGCTGTTACTCGCAAAACAAGAATTCTTGATGTGGTTTACAATGCATCCAACAATGAGCTGGTCCGTACTCAGACATTGGTCAAGAGTGCCATTGTTCAGGTTGATGCTGCACCTTTCAAGCAGTGGTATCTTCAACATTATGGTGTTGACATTGGCCGCAAGAAGAAGAGTGCCACTTCAGTCAAGAAGGAAGGGGAGGATGAACCTGCAACTGAGGAAGTGAAAAAAAGCAAACATGTCTTGAGGAAGTTGGAAAAGCGCCAACAGGACCGGAAACTTGATCCTCATATTGAAGAACAATTTGGAGGTGGTCGTCTATTGGCTTGCATCTCATCTCGACCTGGTCAATGTGGTCGTGCTGATGGGTACATATTGGAGGGCAAAGAGCTGGAATTTTACATGAAGAAGATTCAAAGGAAAAAGGGCAAGGGTGCTGGTGGTGCCTAA 660 0.4682 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSATSVKKEGEDEPATEEVKKSKHVLRKLEKRQQDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAGGA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1634 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 214 IPR001047 GO:0003735|GO:0005840|GO:0006412
Dere04g1634 219 NCBIfam ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Dere04g1634 219 CDD Ribosomal_S8e_like 5 196 - -
Dere04g1634 219 FunFam 40S ribosomal protein S8 32 160 - -
Dere04g1634 219 FunFam 40S ribosomal protein S8 109 175 - -
Dere04g1634 219 MobiDBLite consensus disorder prediction 11 26 - -
Dere04g1634 219 Pfam Ribosomal protein S8e 5 196 IPR022309 -
Dere04g1634 219 MobiDBLite consensus disorder prediction 1 41 - -
Dere04g1634 219 Gene3D - 26 212 - -
Dere04g1634 219 MobiDBLite consensus disorder prediction 129 149 - -
Dere04g1634 219 FunFam 40S ribosomal protein S8 161 214 - -
Dere04g1634 219 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Dere04g1634 219 Gene3D Ribosomal protein S8e, subdomain 108 175 IPR042563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1634 Dere-ChrDere04 18350306 18353156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1634 1 219 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.562 1.29e-126 354