Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1624 ATGCTTATCGCGCAAAGGACACAAAAAACGACGCTGCCCATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTTTGAAACTTGCTGATGATATCAGCAGCATGATTTCTGAACGGAGTTCATTTCCCACAACTGGACCTGAAACCCAGCGCCATGCATCTGCTATAAGAAGAAAGATAACAATATTAGGGACCAGACTTGATAGCTTGCAATCCCTTTTGTCAAAGCTTCCTGGAAAGCAGCCTATATCTGACAAGGAGATGAATCGGCGCAAGGACATGCTTGCAAATTTGAGATCAAAAGTTAACCAAATGGCATCAACATTGAACATGTCTAACTTTGCGAACAGGGATAGCTTGCTTGGACCAGATATAAAACCAGCTGATGCAATGAGCAGAACAGTTGGCCTGGATAACAGTGGACTTGTTGGACTTCAACGGCATATTATGAGAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGAGTGTAACAAGTACAAAACATATTGCTTTGGCTGTGAATGAAGAGCTGGATCTACACACTAGACTCATTGATGACTTGGACCAGCATGTAGATGTTACGGATTCTCGGATGCGGCGTGTGCAGAAGAACTTGGCAATATTGAGTAAGCGTGCCAAGGGTAGTTGCTCCTGCTTGTGCATGCTTTTATCAGTTGTTGGTATAGTAGTTTTGGTTGCTGTTATATTTCTGTTGTTCAAATTCTTGTAA 741 0.4265 MLIAQRTQKTTLPMASSSDSWMKEYNEALKLADDISSMISERSSFPTTGPETQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISDKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPDIKPADAMSRTVGLDNSGLVGLQRHIMREQDEGLEKLEESVTSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRMRRVQKNLAILSKRAKGSCSCLCMLLSVVGIVVLVAVIFLLFKFL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1624 246 SMART tSNARE_6 145 212 IPR000727 -
Dere04g1624 246 CDD SNARE_Qc 153 210 - -
Dere04g1624 246 Pfam SNARE domain 187 237 IPR000727 -
Dere04g1624 246 SUPERFAMILY t-snare proteins 31 113 IPR010989 GO:0016020|GO:0016192
Dere04g1624 246 Gene3D - 152 214 - -
Dere04g1624 246 FunFam syntaxin-51 isoform X2 152 214 - -
Dere04g1624 246 SUPERFAMILY SNARE fusion complex 142 211 - -
Dere04g1624 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 150 212 IPR000727 -
Dere04g1624 246 PANTHER SYNTAXIN 44 234 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1624 Dere-ChrDere04 18263712 18268037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1624 14 246 SNARE and Associated Proteins AT1G16240 72.103 5.41e-125 352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1624 04 18263712 18268037 Dere04g1624 04 18263712 18268037 ECH