Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1622 ATGGATTTGACGCTGGCCGCTGAGGTAAAGGAACTGGCGGAGCAGCCGCAACCGGAGGGCTTGCCGGTGAAGAGGGCGGTTGAGAATGGCGGAGGGGAGGAATTGGTAAAGAAGGCTAAGGTTGAAGCTGCTGCGTCTAGCGGGGAGTTGAAAAGAGTGGCGGAGATTGTGCTGGTTTTGTCGACGATGGCGTCAATGCGGGGTGGTAGGAAGCCGACTGATGTGGAGATTGAGCTGATGAAGGAGGCGAAGGTGAAGTTGGTGGAGTTGTGTCAAGGGCTGGCTCCTAAGGATATTGTGGCAAGGGAAGCTGTAGGGACTGTAATTGAGGATCTTGGGTTGAACGGAAAGATTAAAGATCAGAGATTAGGGTTTCAAACTCCGAAGATATCGATAGCCGAGAGGTTTTCACTCTCCAAGTTGAAGATGGAAGAATCAAAGAAATTTTCTGCACAATCTGCAACATATACGTCTCAGCCATTGCAAACAAGCATGGGTGGAACAGTAGAAAACCGAATGCCATCTCATACTGTTCGCATGTTTCCATTGGACAAATCAAGTCACACAGCAACCTGTTCTGCAAGTACCCTAGCTTCTACTCCTGTGACTCATGTTTCTGCAGGATCTTCTGCAGCTTTGCAGTATCAATCAACTAGTAGTGAAGTAAAACCATCTATAGTTTCTGGCGGAATTCCTACCAGTCACTTAAGTAGAAATTTATCTTCAATAGCCTTGCCTAAAGTCGAACAACCACAGTTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTACTTACTACATGTACAAGCAAATTCTTCACCAAACCAACCTTTGGTGAATGCTCCAACATGGTCGGTACAGACTCAATCCGCCTCATTAGCTAGAACTGCACCAGATAACAAAGGACATAACTCTTTCAAGGTTGAGGGAATGGGTGACCTAACTGTGTCTAAGGCAGCTTCGCAAATACCAAGGGATCAGAGCTTTAGACCATTTGTGACTCAAACAGCACCTGGAAATTCATCTAGCTTTCACCAGCCATTGCAGGGCATGAACATTGTTCAGCCTCCTTCACTTGCTAGTAATCACACTGAAGTTGCAAAGATTGTCCAGAAATTGTTACAACCAAAGTGTCCTGAGCATCCCACATGGACTCCTCCATCGAGGGATTACATGAATAAGGCATTCACATGCCAGATGTGTGAGCTAACTGTCAATGAAGTGGATACTGTGCTTCTTTGTGACGCTTGTGAAAAAGGGTTTCACTTGAAGTGTCTACAGCCTTCAATCTTAAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGGTGCTTGACATTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGGTCCTCGAACACGCCACCAAAATTGCCCTCTAACACAGTTGGAACCCAACCGTCATTAGAGAAGAAGGCTGGAGTGTTAGATCCAAAACAGAAGTTAACACTGTCAACTGATGCCACTGGTAACAACAAAAGTGCTGAGCATTCATCTGACTTAAAGATTTCTGATACAAAAGAAATACAAGATAAAACTTATTCGTCCAACAGTAAACATATGGATGAGAAGCCTGACCCAAACATCTCAATAAAATCCCTTAGTGCTACTACTATTTCTTCTGTAGCCTTGCCATGTGAAAATTCTGCTGAACAAATAATTTCTGAAGCATCTACCTGTAATGAGAGAACCATTTCTTCTGAATCAGCTGCTCTTGCTAAATTACCTGAGTCAGGTAAACTTAACAATTTGGAATTGTGCCAAAATGTACAACTTGAGCAGACTCTGCATCCGAACAATGCTGAAGTCTCATCAGATAAACACATTGAAAATAGTTTGACTGATAATAACGGAAAGGAATATCATGGTGGAGAAAGTTTGACATATGATATCAAACGCGATGCTCAATATGTTGCACTAGCAAATTCTGGTACTAATACTGAAGGTAGACAGTACACCGCATTATATTCAGATGGATCTCATTCAGTAGAATGGGTTGGTGATTGTATACTACTTGTGGATGAGAAAAAGTTTTACCAAGCTTGCTGTGTTAATGGGATTGCATATAGGCTGCAGGATCATGCCCTTTTCCCATCCGGCCATGGCAACTTAACACCTTTTAAACTTCAGTCTATGTGGGAAGATAGCAAAACTGGGTTGAAGTGGGTAAAGGTGACGAATTGCTATTTTCCAGGTGATTTACCAGGGAATATTGGTCATCCATGTGTATCTGAAGTCAATGAGGTTTATGAATCTAATAACGATAGAACTGAAATGGCTGGCTCTATTCGAGATGGTTCTATGATGGACTCAAAAAGCTATTTAAGCCTGTTACCAGTTGATGCCATCCTAAACACCATGATTCTCCTACACAAGGCTATTCCATGGTGA 2427 0.4306 MDLTLAAEVKELAEQPQPEGLPVKRAVENGGGEELVKKAKVEAAASSGELKRVAEIVLVLSTMASMRGGRKPTDVEIELMKEAKVKLVELCQGLAPKDIVAREAVGTVIEDLGLNGKIKDQRLGFQTPKISIAERFSLSKLKMEESKKFSAQSATYTSQPLQTSMGGTVENRMPSHTVRMFPLDKSSHTATCSASTLASTPVTHVSAGSSAALQYQSTSSEVKPSIVSGGIPTSHLSRNLSSIALPKVEQPQFKVDGGSNGSSYLLHVQANSSPNQPLVNAPTWSVQTQSASLARTAPDNKGHNSFKVEGMGDLTVSKAASQIPRDQSFRPFVTQTAPGNSSSFHQPLQGMNIVQPPSLASNHTEVAKIVQKLLQPKCPEHPTWTPPSRDYMNKAFTCQMCELTVNEVDTVLLCDACEKGFHLKCLQPSILRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSSNTPPKLPSNTVGTQPSLEKKAGVLDPKQKLTLSTDATGNNKSAEHSSDLKISDTKEIQDKTYSSNSKHMDEKPDPNISIKSLSATTISSVALPCENSAEQIISEASTCNERTISSESAALAKLPESGKLNNLELCQNVQLEQTLHPNNAEVSSDKHIENSLTDNNGKEYHGGESLTYDIKRDAQYVALANSGTNTEGRQYTALYSDGSHSVEWVGDCILLVDEKKFYQACCVNGIAYRLQDHALFPSGHGNLTPFKLQSMWEDSKTGLKWVKVTNCYFPGDLPGNIGHPCVSEVNEVYESNNDRTEMAGSIRDGSMMDSKSYLSLLPVDAILNTMILLHKAIPW 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1622 808 SUPERFAMILY FYVE/PHD zinc finger 388 452 IPR011011 -
Dere04g1622 808 ProSiteProfiles Zinc finger PHD-type profile. 395 447 IPR019787 -
Dere04g1622 808 ProSitePatterns Zinc finger PHD-type signature. 398 444 IPR019786 -
Dere04g1622 808 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 776 - -
Dere04g1622 808 MobiDBLite consensus disorder prediction 465 480 - -
Dere04g1622 808 MobiDBLite consensus disorder prediction 494 509 - -
Dere04g1622 808 SMART PHD_3 397 445 IPR001965 -
Dere04g1622 808 Gene3D - 669 784 IPR043151 -
Dere04g1622 808 Pfam PHD-finger 398 445 IPR019787 -
Dere04g1622 808 MobiDBLite consensus disorder prediction 455 520 - -
Dere04g1622 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 458 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1622 Dere-ChrDere04 18237237 18242093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1622 398 462 Core DNA Replication Machinery Family AT4G12620 37.838 4.48e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere04g1622 PHD 1.3e-08 CL0390