Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1604 ATGGCTAGCGAAGACGAGAGGCTTCTGGAGACGCAACTGGAGCTTCAGCTGCAAGAGCAGAGGGATTCACTCTCTACTCTCAATCAAGCTTTGGCGTGTGATCCAGCCAATTCCGAACTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCTATCAAGGACGCAGAGGAAGGGCTTCTTCACTTAAAACGTGCTCGATTATTGCATGAAGCAGATTCAGTGCTACGTAGCTCTAATCTTTTTGCTGAAGCAGAGAAAGCAGATCCACTTGATCCCACAGATATTGAACCAGAAACACTGGAGGAACAACACTATTCTGTTGGATCTAAATGTAGATTCCGTCACACTGATGGGCGTTGGTACAATGGTCAAGTCGTGCAGTTGGATAATTCATCAGCAAAGATTTCATTCCTTACTCCTACATCTGAGAACATGCTGATGTGCAAGTTCTTTCTACAACAACGATGTCGGTTTGGTACTAACTGTCGCCTATCACATGGTATTGACGTTCCCCTGTCCTCCCTCAGAAAATATGTCCCTACTACCTGGAAGCAGTCCGTGGTTGGTTCAACTATTTGGGCAGTATCAGATGTTAATGCCGGAATTTGGAAGGAAGCTGAGCTCGAATCCTGGGACGAAGAACTTGGAGTTGGACAAGTTGTTTTTCGAGATGATGGAAGTTCTGTGAAGTTGGGGGCAGAAGCTATAACATTATCTGAGTATGCAGAAATGAGCGATGAAGAGAGTGATTCCAGCATAGAACAATCTGATTTTAGCGACTATGAAGAAGATGGCCCTCAAGGAATTGGCTTTCTGGAAAGTACCAACCTGCAGCGTGGCATTCAGACTGAAACTGCTATATTTGCTAAGTGGGAGAATCACACCAGGGGCGTAGCTTCCAAAATGATGGCTAATATGGGTTACCGTGAAGGTATGGGTTTAGGTGTTTCTGGTCAAGGAATGGTAAATCCCATCCCAGTGAAGGTCCTCCCACCAAAGCAATCCTTAGATCATGCTCTTGAGTCTCGTAAAGAAGAAGAAAGCAAAGACAATCAAGGTAAGAAACGAAGCAGGGGTGGTAAGAGAAAGCGTGATAAGAAATTTGCAGAAGCAATTCGTGTGGCAAAAGAGGAAGAGGAATCGGTGTCAGATGTCTTTACACTAATAAATAACCAGCTGGCAATGCACGGTGAAGCTTTAAATGGTGGATCAATAAAGAAGCAGCAAAGTAAAGGTTCGGGGGAAGGTAAAAAAGTTGATAGGCGGGCTTTGGTTGCTTACGAGGATGAAGTGAAAGACTTGAAGATGCAGGTTGAAAAGCTTGAAGAAATGGTAAATAGAAACAGAAAAGAGAAGGTAGTTTATGAGGCTGCTATGAGAAAATTAATTGAAACCCGCAAGGCTTTAGCAGAGGCTGAAGCAGTCCATGTGTCTGCCTCAAATGCAGTTGTTAGCAAAGAGAAAGAGAAGAAATGGCTTAAGTTTTAG 1485 0.4411 MASEDERLLETQLELQLQEQRDSLSTLNQALACDPANSELLAVHEELVQAIKDAEEGLLHLKRARLLHEADSVLRSSNLFAEAEKADPLDPTDIEPETLEEQHYSVGSKCRFRHTDGRWYNGQVVQLDNSSAKISFLTPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSSLRKYVPTTWKQSVVGSTIWAVSDVNAGIWKEAELESWDEELGVGQVVFRDDGSSVKLGAEAITLSEYAEMSDEESDSSIEQSDFSDYEEDGPQGIGFLESTNLQRGIQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVSGQGMVNPIPVKVLPPKQSLDHALESRKEEESKDNQGKKRSRGGKRKRDKKFAEAIRVAKEEEESVSDVFTLINNQLAMHGEALNGGSIKKQQSKGSGEGKKVDRRALVAYEDEVKDLKMQVEKLEEMVNRNRKEKVVYEAAMRKLIETRKALAEAEAVHVSASNAVVSKEKEKKWLKF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1604 494 Gene3D - 106 178 - -
Dere04g1604 494 MobiDBLite consensus disorder prediction 241 264 - -
Dere04g1604 494 MobiDBLite consensus disorder prediction 338 366 - -
Dere04g1604 494 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Dere04g1604 494 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Dere04g1604 494 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 494 - -
Dere04g1604 494 SMART G-patch_5 292 338 IPR000467 GO:0003676
Dere04g1604 494 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Dere04g1604 494 MobiDBLite consensus disorder prediction 241 260 - -
Dere04g1604 494 MobiDBLite consensus disorder prediction 338 353 - -
Dere04g1604 494 Coils Coil 44 64 - -
Dere04g1604 494 Coils Coil 423 474 - -
Dere04g1604 494 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Dere04g1604 494 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Dere04g1604 494 Coils Coil 10 30 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere04g1604 G-patch 1.9e-12 CL0449