Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1595 ATGCTGGTTCAATTAGCGATGCACCAAGCCCAAGCCATGCATAAGGAAGCACACGATCGAGTATGCCCCAAAATGTGTGACCCAGAACCAGAAATGCGTATTCACCGATTGTTTAATCTACCATCTGAACCGAACCCTCCATGGCCTTCACACCGCTTCTTGCTCACTCTTAGACTCACATACATGGCTCAGCGCCGCTCTCACAAACCTGCTGGAGTGGCACGACGGAACAAAGTATTGGAGATTTCAAAAGCCAATCTTGTGGTGGCTCAGGATGGTACAGGGCATTTTAAGACAGTGCAGGCTGCTATTGATGCAGCATCAAGGAGAAAAGTAAAGATGAGGTTCGTAATACGTGCGAAGACAGGGGTTTATAATGTGAATATTGAGGTTGATAAGAATGACAATCTCATCATTGTTAGTGATGGGATGAGAGTTACCATAATCACCTGCAGTAGAAGCGTTCAAGACGGATTTACCACCTTTGGCACTGCAACAGCAGGAAAAATGGATTTATAG 519 0.4547 MLVQLAMHQAQAMHKEAHDRVCPKMCDPEPEMRIHRLFNLPSEPNPPWPSHRFLLTLRLTYMAQRRSHKPAGVARRNKVLEISKANLVVAQDGTGHFKTVQAAIDAASRRKVKMRFVIRAKTGVYNVNIEVDKNDNLIIVSDGMRVTIITCSRSVQDGFTTFGTATAGKMDL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1595 172 PANTHER PECTINESTERASE 55 167 - -
Dere04g1595 172 SUPERFAMILY Pectin lyase-like 82 166 IPR011050 -
Dere04g1595 172 Gene3D - 81 169 IPR012334 -
Dere04g1595 172 Pfam Pectinesterase 86 168 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1595 Dere-ChrDere04 17933824 17934769 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1595 70 168 Carbohydrate Esterase AT5G51490 57.843 6.75e-29 109