Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1593 ATGGCATCAATCACTATTAAGCTCTTCTACACACTCGCTTTAATTTCTTCACTTTTCTCAACATCATCGTCATCTTCTTTTTCCTCTATAGATTGGTGGTGCAGCAAAACTCCACACCCTGAGCCATGCAAACACTACATGAGTCACAGCCACCACCGGTTCAGACCGAAACACCGATCCGAGTTCAGGAAAATGCTGGTTCAACTGGCGATGGACCAAGCCCAAGCCATGCATAAGGAAGCACATGAGTATACCCCAAAATGTGTGACCGAGAAGCAGAAATGCGTATTCACCGATTGTTTAAAGCTCTACGACAACACCATCTTCCATCTCAACCGAACCCTCCATGGCCTTCACACCACTTCTTGCTCACTCTTAGACGCACAAACATGGCTCAGCGCGGCTCTCACAAACGTCGAAACCTGCCGGAGCGGCGCGTTGGAACAAAGCGTTGGAGATTTCAAGAATAACGCGAGCGAAAACGTTAGAAAGATGATAAGCAATGTGTTAGCTGTAAATGGAGAACTTCTGAAGGCTGAGAATAATTACACGAAAGAAGATGGATTTCCTAGTTGGTTTTCTGGGCATGAGAGGAGGTTGTTGAGGTCGTCTTCGGTGAAGGCGAATCTTGTGGTGGCACAGGATGGTACAGGGCATTTTAAGACAATGCAGGCTGCGATTGATGCAGCATCAAAGAGAAGAGTAAAGACGAGGTTTGTAATACGTGTGAAGAAAGGGGTTTATAATGAGAATATTGAGGTTGATAAGAATAACGACAATCTCATGATTGTTGGTGATGGGATGAGAGCTACAATAATCACGAGTAGTAGAAGCGTTCAAGATGGATTTACTACCTTTGGCACTGCAACAGCAGGCATAGATGGTCTTTACTTTATTGCGCGAGACATCACCTTTAAAAACACAGCTGGCCCTCATAAAGGTCAAGCTGTTGCACTTCGATCAGCCTCCGACCTCTCAGTCTTCTTCCGATGTAGCATAGAAGGTTACCAAGACACTTTAATGGCTCATGCACAACGACAATTCTATAGGAATTGTAAAATTTCTGGCACAGTAGATTTCATTTTTGGCAACGCAGCAATTGTTTTACAAAATTGTTTAATTCTTGTAAGAAAGCCTTTACAAGGCCAAGCAAACATGATCACAGCCCAAGGCCGAGGCGACCCGTTTCAAAACACCGGAATTTCAATTATCAATTCTCAAATTCGGGCAGCCCCTGAATTTAGGTCCGATGTACGCACTTTCCAAACTTATTTAGGTCGCCCGTGGCAACAATATTCCAGAGTAGTTGTCATGAAAACCTACATTGAAAGCTTGGTTAGTCCATTGGGTTGGTCACCATGGGGCAATAGTAATTTTGCTCTAGATACATCGTATTTTGGGGAATACATGAACTATGGAGGTGGTTCGTCACTAAGAAAGAGGGTACAATGGCCTGGGTTTCATGTCATAACAAGCCCAAATGAGGCTGCAAAATTCACTGTGGCCGGACTCCTTGCTGGTAGCACATGGTTGTCTCACACTGGGGTACCTTTTACAAATGGCATTTAA 1569 0.4423 MASITIKLFYTLALISSLFSTSSSSSFSSIDWWCSKTPHPEPCKHYMSHSHHRFRPKHRSEFRKMLVQLAMDQAQAMHKEAHEYTPKCVTEKQKCVFTDCLKLYDNTIFHLNRTLHGLHTTSCSLLDAQTWLSAALTNVETCRSGALEQSVGDFKNNASENVRKMISNVLAVNGELLKAENNYTKEDGFPSWFSGHERRLLRSSSVKANLVVAQDGTGHFKTMQAAIDAASKRRVKTRFVIRVKKGVYNENIEVDKNNDNLMIVGDGMRATIITSSRSVQDGFTTFGTATAGIDGLYFIARDITFKNTAGPHKGQAVALRSASDLSVFFRCSIEGYQDTLMAHAQRQFYRNCKISGTVDFIFGNAAIVLQNCLILVRKPLQGQANMITAQGRGDPFQNTGISIINSQIRAAPEFRSDVRTFQTYLGRPWQQYSRVVVMKTYIESLVSPLGWSPWGNSNFALDTSYFGEYMNYGGGSSLRKRVQWPGFHVITSPNEAAKFTVAGLLAGSTWLSHTGVPFTNGI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1593 522 PANTHER PECTINESTERASE 15 512 - -
Dere04g1593 522 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Dere04g1593 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 177 IPR035513 -
Dere04g1593 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 176 IPR035513 -
Dere04g1593 522 SUPERFAMILY Pectin lyase-like 204 521 IPR011050 -
Dere04g1593 522 SMART PMEI_2 25 172 IPR006501 GO:0004857
Dere04g1593 522 FunFam Pectinesterase 203 522 - -
Dere04g1593 522 Pfam Pectinesterase 209 507 IPR000070 GO:0030599|GO:0042545
Dere04g1593 522 NCBIfam pectinesterase inhibitor domain 8 176 IPR006501 GO:0004857
Dere04g1593 522 CDD PMEI-like_3 32 178 - -
Dere04g1593 522 Gene3D - 203 522 IPR012334 -
Dere04g1593 522 Pfam Plant invertase/pectin methylesterase inhibitor 29 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1593 Dere-ChrDere04 17912485 17914386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1593 33 522 Carbohydrate Esterase AT5G51490 57.570 0.0 595