Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1580 ATGGAGAAGAAGAAGAAGAAGAACAATGGCAACAAGGTCTGCAAGATCTGCAATAGGTGCTTTGCTAACGGGCAGGCCATGGGAGGCCATATGAGGTCCCACTTGGCTAAACTTCCTATCCCTCCCAAGCCTGTTACAACAACTCCAATCACTGATTGTGTGCCACTGGAGAACTCCACTGCTAGTGTTCATGGTAATTTGACTTTGTCCCAATGTCTTCTAACCTCGTCTTCTTCACTCACCATCCACTCCATGAAGAATTCCCCTATTGTGCAAAACTTTCACTCTCTAAATCGAGACTTCACAGCAATTATGGCAAACCCTGACGGTAACCAAGAAAGCAAATATGATCAATCTTACCCAACCCCCAAAAGATCCAAACGTTACCGCAAATTTATTGATATTGAAGCAGCAATGGCATCGTCATCTAAGACAAAAGTTGGAGATGTCGAGCCAAAACATAAAACAAGTTCAATATTCGATGCTCTTTCTCCTGCTATAGAAGCTGCTAGGACTCTAGTAATGCTTTCCAAGGACAAATGGCCCAAAGGCAAAGAATTGATCAAGAAGAAACAACAAGTGGAGGAAAAAGATGATGATGATAACATTGATGAAATACTTATTCCGATTCGCTCTCAAGTTAACAAGTTCGGGTGCGATATGTGCAACAAAGTGTTTAGGTCTTACCAAGCACTTGGTGGGCATAAAGCAAGCCATAAGAAGATAATTAAGAATCATCATTGGGGGGAAGATGGTGAAGCTGATAAAGATGGCAATAAAGGTATTAATAGTGATGTTCTTGATGATCCAAAAGGGTTTGAGTGCCCACTTTGCTTCAGAATGTTTAAGTCTGTCCAAGGGCTTGGAGGACATAAGAAGGCACACTTTCCCAACGAAAAGAAATTTAAGGTCTGTTTCATTGATCTTAACATGCCTGCCCCTGAGGAAGATATCGAACAGGTTAGCCAAATTGAGTTTTCAGCTGTGTCTGGAAATGACTATTAA 1005 0.4149 MEKKKKKNNGNKVCKICNRCFANGQAMGGHMRSHLAKLPIPPKPVTTTPITDCVPLENSTASVHGNLTLSQCLLTSSSSLTIHSMKNSPIVQNFHSLNRDFTAIMANPDGNQESKYDQSYPTPKRSKRYRKFIDIEAAMASSSKTKVGDVEPKHKTSSIFDALSPAIEAARTLVMLSKDKWPKGKELIKKKQQVEEKDDDDNIDEILIPIRSQVNKFGCDMCNKVFRSYQALGGHKASHKKIIKNHHWGEDGEADKDGNKGINSDVLDDPKGFECPLCFRMFKSVQGLGGHKKAHFPNEKKFKVCFIDLNMPAPEEDIEQVSQIEFSAVSGNDY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1580 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Dere04g1580 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 239 IPR013087 -
Dere04g1580 334 Pfam C2H2-type zinc finger 217 241 - -
Dere04g1580 334 Pfam C2H2-type zinc finger 13 36 - -
Dere04g1580 334 Pfam C2H2-type zinc finger 273 295 - -
Dere04g1580 334 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Dere04g1580 334 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Dere04g1580 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
Dere04g1580 334 SUPERFAMILY beta-beta-alpha zinc fingers 13 239 IPR036236 -
Dere04g1580 334 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Dere04g1580 334 Gene3D Classic Zinc Finger 214 295 - -
Dere04g1580 334 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 11 325 IPR044303 GO:0006355
Dere04g1580 334 SMART c2h2final6 12 34 IPR013087 -
Dere04g1580 334 SMART c2h2final6 217 239 IPR013087 -
Dere04g1580 334 SMART c2h2final6 273 295 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1580 Dere-ChrDere04 17633362 17634366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1580 14 324 C2H2 Transcription Factor Family AT1G02030 30.189 4.33e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g1580 zf-C2H2_6 7.8e-12 CL0361