Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1578 ATGGCGAATTTGCCCCAATCACTCTCCATGAACGCGCCATTCGGAGCTCCCGGTGCCTCCACCCAGAACGCCGCCGCTACTCAGGCCAACAAGGAACGCAAGATGGCGTCTGCTGAGCACCTTGTTCTCGAACTAAGCAATCCTGATCTCCGAGAAAATGCTCTTCTTGATCTTTCCAAGAAGAGAGAGTTATGTCAAGATCTTGCTCCGTTACTGTGGAATTCTTTTGGTACTATTGCAGCACTTTTACAGGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACACCAGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCTTCTCATCCAGATACAAGGATGTTATTCCTCAATGCTCATATACCTCTGTATCTGTATCCTTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTATTTGAGGCTTACCAGTCTTGGTGTCATTGGTGCCCTGGTCAAGGTTGATGATACAGAAGTTATAAGCTTCCTTCTCTCAACAGAGATAATTCCACTCTGTCTTCGCACCATGGAAATGGGCAGTGAATTGTCAAAAACTGTTGCAACATTTATAGTCCAAAAAATTCTGTTGGATGATGTGGGCTTGGATTATATATGTACTACAGCAGAGCGTTTTTTTGCAGTAGGGCGAGTTTTGGGGAACATGGTCGCAACACTAGCTGAGCAACCCTCATCGCGTCTGTTGAAACATATCATTCGATGTTATCTCCGCCTGTCAGATAATCCAAGGGCTTGTGATGCATTAAGAAGTTGTCTGCCAGACATGTTAAGAGATGCCACTTTCAGTAGCTACCTCCGTGAGGACGTAACAACGAGGAGGTGGCTACAACAATTGCTTCTCAATGTTGGAGTGAATCGGGTTCCTACACTACAAGCTGGAGGAGGTTTCGATCATATGATGGTGTCGTGA 960 0.4479 MANLPQSLSMNAPFGAPGASTQNAAATQANKERKMASAEHLVLELSNPDLRENALLDLSKKRELCQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVATLAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSYLREDVTTRRWLQQLLLNVGVNRVPTLQAGGGFDHMMVS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1578 319 SUPERFAMILY ARM repeat 44 269 IPR016024 -
Dere04g1578 319 MobiDBLite consensus disorder prediction 12 30 - -
Dere04g1578 319 Pfam Cell differentiation family, Rcd1-like 41 299 - -
Dere04g1578 319 FunFam Cell differentiation protein RCD1 31 302 - -
Dere04g1578 319 PANTHER UNCHARACTERIZED 30 302 IPR007216 GO:0006402|GO:0030014
Dere04g1578 319 MobiDBLite consensus disorder prediction 12 31 - -
Dere04g1578 319 Gene3D - 29 300 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1578 Dere-ChrDere04 17567877 17572733 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Dere04g1578 Rcd1 8.5e-128 No_clan